UFO10676.5prime Sequence
1155 bp (1012 high quality bases) assembled on 2012-01-11
> UFO10676.5prime
CAGTCGACATGGTTCAGTTCCTGGGCAAACAGGGCACCGCGGGTGTTTTT
ATTTCATTTGGAATGCACAATCCTTTCCCAGAGCTCATTCACATGGTGAC
CCTGGACAAGACGGGCAAGAAGTCCTTCGGCATCTGCATAGTGCGCGGCG
AGGTGAAGGATTCGCCCAACACCAAGACCACCGGCATCTTCATCAAGGGC
ATTGTGCCCGACAGTCCCGCGCATCTGTGTGGTCGCCTAAAGGTTGGCGA
TCGGATCCTCTCGCTCAACGGAAAGGATGTGCGCAACTCCACCGAACAGG
CGGTCATCGATCTCATCAAGGAGGCGGACTTCAAGATCGAACTGGAGATT
CAGACCTTCGACAAGAGCGATGAGCAGCAGGCCAAGTCAGATCCGCGGAG
CAATGGCTACATGCAGGCCAAGAACAAGTTCAACCAGGAGCAGACCACCA
ACAACAATGCGTCCGGAGGTCAGGGAATGGGGCAAGGTCAGGGTCAGGGT
CAGGGAATGGCTGGCATGAACCGGCAGCAATCGATGCAGAAGCGGAATAC
CACATTCACGGCCTCGATGCGTCAGAAGCATAGTAACTACGCCGACGAGG
ATGACGAGGACACCCGGGACATGACCGGTCGCATTCGCACGGAGGCGGGT
TATGAGATCGATCGAGCATCCGCCGGTAATTGCAAACTCAACAAGCAGGA
AAAGGATCGCGACAAGGAGCAGGAAGATGAATTTGGCTACACGATGGCTA
AGATCAACAAGCGGTACAACATGATGAAGGATCTGCGCAGGATCGAGGTC
CAGAGGGACGCCAGCAAGCCACTGGGACTCGCACTCGCTGGCCACAAGGA
CCGCCAGAAGATGGCCTGCTTTGTTGCCGGTGTGGATCCCAACGGAGCAT
TGGGTAGCGTGACATCAAACCGGGCGACGAGATCGTCGAGGTCAACGGCA
TGTGCTGAAGAATCCCTGCCACTTGAACGCTTCCGCCGTGTCAAGACGTG
ATGGGATAAGCTCGTGATGATCACCTCGCGACGCAGCCCAACGATGAGGC
CATGTGCGTCAGCCCATCAGAAGTTCCCCCACCGCGTCTGATGAGACTAA
GTTTATCTTCGACATGGTTCCAGGCGCGCGCCACGGGTGCAGGTCGCCCA
AGAGA
UFO10676.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| inaD-RB | 2331 | CG3504-RB | 197..1327 | 9..1129 | 5295 | 98.5 | Plus |
| inaD-RA | 2295 | CG3504-RA | 233..1291 | 81..1129 | 4935 | 98.4 | Plus |
| inaD-RA | 2295 | CG3504-RA | 197..233 | 9..45 | 185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22857601..22858212 | 656..45 | 3060 | 100 | Minus |
| 2R | 25286936 | 2R | 22857038..22857394 | 1095..747 | 1285 | 95.2 | Minus |
| 2R | 25286936 | 2R | 22857450..22857548 | 753..655 | 480 | 99 | Minus |
| 2R | 25286936 | 2R | 22858562..22858598 | 45..9 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:39:18 has no hits.
UFO10676.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:50:48 Download gff for
UFO10676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inaD-RB | 189..1327 | 1..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:29 Download gff for
UFO10676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inaD-RB | 189..1327 | 1..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:10 Download gff for
UFO10676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inaD-RB | 189..1327 | 1..1129 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:10 Download gff for
UFO10676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22857038..22857393 | 748..1095 | 96 | <- | Minus |
| 2R | 22857456..22857546 | 657..747 | 100 | <- | Minus |
| 2R | 22857601..22858211 | 46..656 | 100 | <- | Minus |
| 2R | 22858562..22858606 | 1..45 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:29 Download gff for
UFO10676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18744561..18744916 | 748..1095 | 96 | <- | Minus |
| arm_2R | 18744979..18745069 | 657..747 | 100 | <- | Minus |
| arm_2R | 18745124..18745734 | 46..656 | 100 | <- | Minus |
| arm_2R | 18746085..18746129 | 1..45 | 93 | | Minus |
