UFO10677.5prime Sequence
1141 bp (1048 high quality bases) assembled on 2012-01-11
> UFO10677.5prime
CAGTCGACATGGGCGATCGTAGTTGGAACCTGCTGCAGTATGCCACCGAG
AAGGCGCCAATACCACTGGACGGCTACACCGCCGAGGAGGCGGCCGAGTT
CAAGGACAGCATCAGGCAGAAGATCGTAGACGATCTGAAGTCCATGACGG
GCGAGGAGCTGATAGAGCTGGTCAAGCAGAATGCTGCCAAGGTGGAGGAG
GAGAAGGTGGAGATTCCGCCCACGGAACCCCTATCCGGCACCGAGGAGGG
CAAGGAACGAGTGCAGGATGATGCGGATCTCATAGATGCCGGTATCATAG
CCGAAATGGTCGCTGGACTGTGCACCAAAAGCCAGAAGGAGACGTTCATC
AAGGTGATAACGAAGTATATCAGCAGTCAGAGACGCCACTATTCGATGCG
GCCCCATCGCGAGCAGGAGCAGCGAAATGCGGAGGATGTGCTATTCGACA
TGTTCGCCAGCGAGGAGACGGGCCTCATCTCGATGGGCAAGTTCCTGGCC
GGGCTAAAGACCACCGGAATTCGCCGGAACGATCCGCGAGTGCGAGAACT
GATGGACAACTTGAAGAAAGTGCACAAGCTAAATAACTACGAGACGGGTT
CTTCGGCGGAAACTCAGCATCTCAATCGAGAGACCTTCAAGGCTGTGGTT
GCCCCCAATATTGTGCTGATTGCCAAGGCCTTCCGGCAGCAGTTCGTTAT
TCCCGACTTTACGAGTTTCGTCAAGGACATCGAGGATATTTACAATCGCT
GCAAGACCAACACTTTGGGCAAGTTGGCCGACTACATTCCGCAGCTGGCT
CGCTATAATCCCGATTCCTGGGGCCTGAGCATCTGCACGATTGATGGCCA
GCGCTTCTCCATCGGCGATGTGGATGTGCCCTTCACACTCCAGAGTTGCA
GTAAGCCGCTGACCTACGCCATTGCCCTGAGAACTGGGTCCCAGGTCGTG
CACTCTTATGTGGGCCAGGAGCCGAGTGGCAGAACTTCAACGACTTGTTC
TGATCAGAACAAAAGCCACACATCGATGATCAACGCTGGTGCCATTCTGA
CTGCTCCTGATGACGCCCTGTTCAAGCCGAACTGACCTCCGCTGAATCTT
CGACACACACCAATGTCCTGTCCAACGCGTGTCGAGCGAAA
UFO10677.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RB | 2970 | CG42708-RB | 64..1173 | 9..1104 | 5155 | 98.5 | Plus |
| CG42708-RC | 2741 | CG42708-RC | 200..944 | 374..1104 | 3330 | 97.7 | Plus |
| CG42708-RD | 2912 | CG42708-RD | 494..1238 | 374..1104 | 3330 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12674991..12675355 | 373..9 | 1825 | 100 | Minus |
| 2R | 25286936 | 2R | 12672684..12673037 | 993..644 | 1575 | 98.3 | Minus |
| 2R | 25286936 | 2R | 12673100..12673339 | 643..404 | 1200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:39:27 has no hits.
UFO10677.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:50:49 Download gff for
UFO10677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RB | 64..1187 | 9..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:34 Download gff for
UFO10677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RB | 64..1187 | 9..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:13 Download gff for
UFO10677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RB | 64..1187 | 9..1120 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:13 Download gff for
UFO10677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12672664..12673037 | 644..1011 | 98 | <- | Minus |
| 2R | 12673100..12673339 | 404..643 | 100 | <- | Minus |
| 2R | 12673899..12673928 | 374..403 | 100 | <- | Minus |
| 2R | 12674991..12675355 | 9..373 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:34 Download gff for
UFO10677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8560605..8560844 | 404..643 | 100 | <- | Minus |
| arm_2R | 8561404..8561433 | 374..403 | 100 | <- | Minus |
| arm_2R | 8562496..8562860 | 9..373 | 100 | | Minus |
| arm_2R | 8560169..8560542 | 644..1011 | 98 | <- | Minus |
