UFO10680.5prime Sequence
1150 bp (1045 high quality bases) assembled on 2012-01-11
> UFO10680.5prime
CAGTCGACATGGGCCTGCTGCTGCTTCTGGTGCTGATAGCGGGCATTGGC
TGCGCAACTGCAGCAGCCAACATTGACCTGGAGGCCAAGACGTTTGTGAA
TCAATCGAGCGATCGCTACTACAGGTTCTATAATGAGATTGCCGCCGAAA
CGTATTCGGCCAACAACGAAGAGGACTTCGATGCCCTTTTCTCCAAACTA
AACAATGTGAAGCGGATTGCCGAGGAGCTGGTGAGCATCTCCCGGCAGGC
TGCGACCTACGATCTGGACAGGATTCGCAGCCCGCAGACGAAGATGGCCC
TCCAGGAGCTGCGCACTGCGGGTGACTTGTTCGTCCTGGGCGACGACTAT
TTCTCCTCCGTACAGATGAACTTGGCTGCGCTGCAAACACTTTCCACGGA
CAAGGACATCGAGCCGTATCTTGGTGGGGCCAATATGCCCAACGAGGACG
ACAGTCCGCTGGCCTATTTCCCAGACATCCAGAAGATCGTGCAGAGCAGC
AAGGATGCCGACGAGCTGAAGTACTATTGGGAGGCCTGGCGGGATAAGAA
CCAGCTGTGGGCCTCCCTCAACTTCTACACCATAGTGCAGTCTTACCAGA
GGGCCGCCAAGATCCTGGAGGTGCCGGTGCACAAACTGTGGTACCGATAC
GACAGCCAAGAGATGCTGCAGCAGATGGAGCAGGCGATGACGGAGCTGCG
CCCCGCATACCAGCAGCTCCACGCCTTTGTCCGCCAGGAGCTGCATAAGA
AGTACGGCTCCGATGTGGTCAATCTCAATGGACCGATACCGGATCACCTG
TTCCAGCAGGTTCTCGAACAGGCCTGGGCCAGTGGCAGCATCCTGGAGGA
TTACTACCCGCGTGCCCAGTTGCCGGAGTTCGATGAGTACGTTAGTCACT
TGACCGCCAGGACCATGGTGAACGAGTCCGATGCTTCTACACTTCGCTGG
GCTTCGAGCCTCTGTCCGCCGAGTTCCACAAGAATCAGCTGATGGAACCC
AACCAGGGACAGCCCCAACGACGACTGTCGCCCCTCATCTTTGGACTCCA
CGGCCACACGGGTGTCCTTATGTTACTGGCGAGAAGGGTCAGCTCGGAGC
CTGATGCAGTAACCCAGGCGACGTGTCAGGTTACTACGCCAAGCGAGAAG
UFO10680.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ance-4-RA | 1948 | CG8196-RA | 56..1195 | 9..1150 | 5125 | 97.2 | Plus |
| Ance-4-RB | 2008 | CG8196-RB | 158..1255 | 51..1150 | 4915 | 97.1 | Plus |
| Ance-4-RB | 2008 | CG8196-RB | 56..97 | 9..50 | 210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9040826..9041811 | 1036..51 | 4775 | 99.4 | Minus |
| 2R | 25286936 | 2R | 9042046..9042087 | 50..9 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:39:35 has no hits.
UFO10680.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:50:50 Download gff for
UFO10680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-4-RA | 48..1106 | 1..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:37 Download gff for
UFO10680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-4-RA | 48..1106 | 1..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:17 Download gff for
UFO10680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-4-RA | 48..1106 | 1..1060 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:17 Download gff for
UFO10680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9040803..9041811 | 51..1060 | 98 | <- | Minus |
| 2R | 9042046..9042092 | 1..50 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:37 Download gff for
UFO10680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4928308..4929316 | 51..1060 | 98 | <- | Minus |
| arm_2R | 4929551..4929597 | 1..50 | 92 | | Minus |
