UFO10681.5prime Sequence
1065 bp (892 high quality bases) assembled on 2012-01-11
> UFO10681.5prime
CAGTCGACATGAAATATATAAATTGCACTCAGCCCGCCATCGATGACTTC
CCCCGAGACCTATTCTCGGAGGCGCAAAGACAGTCTGGTGCTGTTGTACT
TCATGTTATAGCCAGTTTATATTTATTTGTAGCCTTAGCCGTAGTGTGTG
ATGAGTACTTTGTGCCAGCAGTTGAGAAAATATGTGCAGCACTCAACATG
TCCAATGATGTGGCGGGTGCCACTTTCATGGCCGCGGCCACCTCCGCCCC
AGAATTATTTGTCAACGTGATAGGAACCTTTATCACGGAGGGCGACATCG
GAGTGGGCACGATTGTCGGATCGGCGGTATTTAACATCCTGGCAGTGGCC
GCGTGCTGCGGAATCGGAGCTGGCATGACAATACCCTTGGACTGGTGGCC
ACTGACGCGGGACAGCATCGCATACGGAGTTACAGTGGCCATTCTCATTT
GTGTTATGCACGACGAGCGCGTCGAGTGGTATGAGGCCCTCATCCTGGTC
TCCCTGTATGCCGTCTATCTTGCGGTCATGTATTTCGACAAAACTTTCCA
AAAGTGCGCCAAAGGTGGCGTTAAGCAGGCTCGTTCTCGCAGCCGGTCCT
CCAACTGCAGCATACATACAAAGAACAGCAATGAGAAGGAACCAGAGCTT
GTGGAAAACCGCATTTGCCAGAACATGGCGAACATACAGCTAAACGGAGG
ACTTAACAAGAGCAGGCCCAGGCCACAAGCACATCCGGAGCCGGTACCAC
CGCGATTTCGATAACCACCTCGACCATGACCACACTTTGAGCACCACCCA
TAGTGCCGGAGAAGAGGTGAAGCAGTTGGTCTTTGTTCGGGACCAGGGTC
ATTGTGCAATGGCACCACTAGACGTGCCGAGGCAGATTCTCACGTGCCGT
AACTGCCGCTGAACGAGGGCCGTAAGGAGGAGGAATACTCCCTCTGCTCC
TCAACCGAAGGATAAAACTGCTTGCCCAGTTAACTGCTCATCATTGCCCG
ATCCATCTTGCTATTCCATGCATCTGACTGCAGAGCCAAAACAATAAATT
CCCTGACCTAACTGG
UFO10681.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zyd-RA | 2172 | CG2893-RA | 153..1169 | 8..1015 | 4480 | 97.1 | Plus |
| zyd-RF | 2094 | CG2893-RF | 82..1091 | 15..1015 | 4445 | 97 | Plus |
| zyd-RH | 2341 | CG2893-RH | 330..1338 | 16..1015 | 4440 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23032743..23033046 | 643..940 | 1005 | 94.8 | Plus |
| X | 23542271 | X | 23030420..23030613 | 188..381 | 955 | 99.5 | Plus |
| X | 23542271 | X | 23030666..23030856 | 377..567 | 955 | 100 | Plus |
| X | 23542271 | X | 23030190..23030363 | 16..189 | 870 | 100 | Plus |
| X | 23542271 | X | 23032518..23032600 | 563..645 | 415 | 100 | Plus |
| X | 23542271 | X | 23044008..23044153 | 197..342 | 190 | 75.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:39:43 has no hits.
UFO10681.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:50:51 Download gff for
UFO10681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2893-RA | 139..1109 | 1..965 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:42 Download gff for
UFO10681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zyd-RA | 145..1115 | 1..965 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:19 Download gff for
UFO10681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zyd-RA | 145..1115 | 1..965 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:19 Download gff for
UFO10681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23032746..23033046 | 646..940 | 94 | == | Plus |
| X | 23030667..23030853 | 378..564 | 100 | -> | Plus |
| X | 23032520..23032600 | 565..645 | 100 | -> | Plus |
| X | 23030190..23030363 | 16..189 | 100 | -> | Plus |
| X | 23030422..23030609 | 190..377 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:42 Download gff for
UFO10681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 9485..9671 | 378..564 | 100 | -> | Plus |
| XHet | 11338..11418 | 565..645 | 100 | -> | Plus |
| XHet | 9008..9181 | 16..189 | 100 | -> | Plus |
| XHet | 9240..9427 | 190..377 | 100 | -> | Plus |
| XHet | 11564..11864 | 646..940 | 94 | == | Plus |
