UFO10683.5prime Sequence
993 bp (876 high quality bases) assembled on 2012-01-11
> UFO10683.5prime
CAGTCGACATGGCGCGGTTTAGTGGAGTTGTACTGCTCCTGGCAATCGTC
CTTCTTGCCGTTTTTGTGGCACAAGGCCTGGCAGAGAAGAACGCCAATAG
GCAGAAGCAGCAGAAGCCCAGACCGGGAAATCAAAACTTTGGTATCCAGA
AAAATAAGCGTCCAAAGCCCCAAAAAGTGCAGAAACAGAAGCCCAACAAG
CAACAGGGTCAGAATGGTCAAGAGCCAAAGGTATTTACCACAACGGTTCC
TGATTTGGGCAGGCTCCGTGGACGAACTCTCACCACCGATTGGACAGGGC
AGAAGATAATGCAGTTCTTGGACATTCCCTACGGCAAAGCAGAGCGATTC
AGGCCAGCTGAGCCCGCACCTTCCTGGAAGGGCGTCCTTCCCGCCCATCG
ACCACACGCCGGCTGTCCATCCATTCAGGATCTGATTGTGTTCGCCAAGC
TGGAGGAAGATGGCTTCGATGTGGAAGACTGCCTGCGTCTGTCAGTGAAC
ACCAAGGCGATGGAGGGCAAGTCCCTGCCGGTGATGGTGTACATCCATGG
CGATTTCTTCTACGACGGTGACTCTGTGGAGGCAGCTCCCGGGTATTTGT
TGGAGCACGATGTGGTCCTGGTGTCCGTGCGTTATCGCCTGGGAGACCTC
TGGGCTTTCTGTCCACGCTGACAGACGAGATGCCTGGCAATGCAGCGGTC
ACGGACATCATCCTGGCCCTCAAGTGGGTGCAGCAGCACATCGCATCCTT
CGGCGGCGATCCACAGCGGGTGACGCTCTCGGCCAAGTGGGGCGGAGCAG
CATTGGTCACGTGCTCACCCTGAGTCTGCGTCGCCGCTCTCATCGCGTGA
TCTATCAGTCTGGGACGCACTGTCGCCGCTCATCACGATGCTCACTGGCG
CACAGCATGCGATCGCGGATGCAACAGTCATTAGTGATCACTGAACATGT
CTACGCTAGCACATAGTCTGCGCGTTCCGTCCACGGAACAACA
UFO10683.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9289-RA | 2129 | CG9289-RA | 27..930 | 9..898 | 4025 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8684006..8684350 | 353..9 | 1725 | 100 | Minus |
| 2L | 23513712 | 2L | 8682745..8683061 | 826..509 | 1310 | 96.9 | Minus |
| 2L | 23513712 | 2L | 8683150..8683306 | 509..353 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:39:52 has no hits.
UFO10683.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:50:51 Download gff for
UFO10683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9289-RA | 1..898 | 9..893 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:46 Download gff for
UFO10683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9289-RA | 27..924 | 9..893 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:24 Download gff for
UFO10683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9289-RA | 27..924 | 9..893 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:24 Download gff for
UFO10683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8682699..8683060 | 510..863 | 95 | <- | Minus |
| 2L | 8683150..8683305 | 354..509 | 100 | <- | Minus |
| 2L | 8684006..8684350 | 9..353 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:46 Download gff for
UFO10683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8682699..8683060 | 510..863 | 95 | <- | Minus |
| arm_2L | 8683150..8683305 | 354..509 | 100 | <- | Minus |
| arm_2L | 8684006..8684350 | 9..353 | 100 | | Minus |
