UFO10685.5prime Sequence
1170 bp (973 high quality bases) assembled on 2012-01-11
> UFO10685.5prime
CAGTCGACATGCTGAACTCGAATGCCACCGGCGGCAACAATCATGGGGGC
AGCAGCCGTCGGCCCTTTACCCGCAATTCTTCATCGGTCCGCTCGCAACG
CGGCGGTGGTGGCGGGCTGGGCGGTCGCATGGTATACTCGCCACACACAC
ATCCGCACGTCCAGCAGCAGCAACAACAACAACAGCAGCAACAGCAACAG
GGGCAGCAGCGGTCCAGCAATAACGGCAACAACAACCTGTGGCTGGGCAA
CAGTCCGTGGTGCAACGTCAATTTAAACGGTGGCAACAGCGGCAACAACA
ATAACAACGGTGGCAACAACAACAATAACAACGGTGGCAACATCAGCAGC
AACAACAACAGCAACAATGTCAATAACAAAGATGCAAACCCAAATTGCGA
TGTACAAACAAGTAATTCTAGCGGAACTTGTATTTATAACAATAGCAAAG
CGCATCATCATCACAACAACAGCAACAACAATGGTCACACTCAGAGCCAC
ATTCACACTAATCATTCCCTCCACCAAGGTCACCATCACCCCCACCACAC
CCAAATGCACACACCCCACTACCCGCATTCGAGTTCACCACAGCAGTCAA
ACAGTTACCGCCAATACCCACCGCATTCCTACTCCCCCAACTCCCCACAC
AGCAACGGCCATACAAACAGCAATGCTAGCAATAATCCCATTAGTCAGCG
TAGTAATCCCCAAGCCCACCCCAACCAGAACCAAAATTCCAATTTTTACG
AGATGTGTACGGGAAGTGGGGGATCCCACACCTATGGATCCATGTCCGTT
TCCCTGGTGAGACTGAATCCCTGCCCCGTTTGTGCCCTAACGCTTGGCCC
TGTCAACGCCGCCCGCCCAGCGAAGTAGTATCCTTTTGGCCACAGAATCC
CCATTCCCCATTCCTGTTTCCAAGTTCCAACACCAGTTCTTAGGTGATCC
AGAATTCAGCAATAACCCCGGCCCGCCGACGTTAGGTCAAAAACCATTCC
CCCCCCAATTCCACCATTCATAGTTCCGGTAACCCAGTTACCAAATACCC
GGTTACCCAATTACCCGATATACCAGGTTTCCCATTCCGCGCCCAACACC
CAGGTTTACCATCCCCATTTGGCCATAGCCCCCAAAGGCCAACCGAGAAA
CCTTATTGGCCCCCAATTCC
UFO10685.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mura-RC | 4671 | CG9381-RC | 207..1151 | 8..968 | 4375 | 98.1 | Plus |
| mura-RB | 3807 | CG9381-RB | 258..648 | 8..398 | 1955 | 100 | Plus |
| mura-RA | 6303 | CG9381-RA | 225..615 | 8..398 | 1955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:40:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9542441..9542925 | 886..397 | 2205 | 98.6 | Minus |
| 3R | 32079331 | 3R | 9546798..9547187 | 397..8 | 1950 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:40:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2700 | 312..714 | 217 | 55 | Plus |
UFO10685.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:50:52 Download gff for
UFO10685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mura-RC | 201..1154 | 1..973 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:50 Download gff for
UFO10685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mura-RC | 201..1154 | 1..973 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:27 Download gff for
UFO10685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mura-RC | 201..1154 | 1..973 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:27 Download gff for
UFO10685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9542364..9542924 | 398..973 | 96 | <- | Minus |
| 3R | 9546798..9547193 | 1..397 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:50 Download gff for
UFO10685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5368086..5368646 | 398..973 | 96 | <- | Minus |
| arm_3R | 5372520..5372915 | 1..397 | 99 | | Minus |
