UFO10686.5prime Sequence
1142 bp (1027 high quality bases) assembled on 2012-01-11
> UFO10686.5prime
CAGTCGACATGAATTACTACGTCTGTCTGCACCAGGAGGGTGTTAATAGC
ATACCCAAGTTAATCGAGAAGGCCTTCGCGAACAACTATAATGTGGTTTC
CACCTCTATCAACGCCAATATGTTGCCCTTCGAACCACACGAATCGGATC
CCACATATCCGGCCACAATTTTGAGCGGCAGCGACTGGAATTCCAAGGTG
ATATTTACCATGTCCGACGTGAATGTGGACTCGCCGAATGACAAGCTGCG
CGAACACGCAAAGGAGGTATTCATGAGGGACGTGGCCTGGGCGGAGCACC
TGCAAAATGTGGGCAACCTGATGGTACGGCTGCGCGGTCCGGAAAACGAG
AATCTGGCCTCCATTGTGCTGGCCAAAACAAAGGGGAACTGGTTCATCCA
AGTGCCCATCACCAATCCAGAACTGGCCACATTCGAGCACCGAAAGGATG
CCACCGCCGAGGAGGTGGCTGAAGCGGAATCGAATGACCCGTGGAACTGG
TGGAATAACCTGCGCATGGTCACCAAACACAGCACCAAAGTGAAGGTTGT
GATAGAGCTAAACGATGCTGATCGACCCAGCAAGGAAACAGTGCGTCGCT
GGTTGGGCGAACCAATCGAGGCAATCATCATTCCGTCTTCCCTGTTCGTC
AGAAACCGCTCCAACTACTGTGTGCTGAAGAAGGAGTGGCAGCTCATCGT
CGGGCACTTCATCTCGGTACGGGCCAACATCATCATCTCCACAAATCCCA
ACGATAAGGCTTTGTGCCAGTACGCGGATTACGTAAATAAGCTAATTAAT
GATAACTGCGATAAGCACATGCTAAACAGCTATGAAAACATGCTGGAAAT
TCCACTGCAGCCTCTTTGCGATAATCTGGACACCTATACCTATGAGGTAT
TCGAAACTGATCCTGTCAAATACAAACTCTATCAGATGCCGTACAGCGGC
CCTGTTGGATCGAGTAAAGCGCTGCGGAGGCTAAACGAAACTGACAGTTG
TAATGCTACTGGGTGGAGACGAGTCCTTAGCGAGAGCTGTTTTTCAATGC
TGCCGAGTAACGAAGCGCAAGTTCGCCTCTACTTCATAGAAAGAATCCCA
ATGCCATCGACTTTCGACATTGTTAAAAGGCTTGGCGGATAA
UFO10686.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csul-RB | 1998 | CG3730-RB | 96..1202 | 9..1108 | 5255 | 98.9 | Plus |
| csul-RA | 2013 | CG3730-RA | 96..1217 | 9..1108 | 5095 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:40:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16265181..16265626 | 384..829 | 2230 | 100 | Plus |
| 2R | 25286936 | 2R | 16264747..16265123 | 9..385 | 1885 | 100 | Plus |
| 2R | 25286936 | 2R | 16265686..16265844 | 828..985 | 650 | 98.1 | Plus |
| 2R | 25286936 | 2R | 16265913..16266033 | 993..1108 | 250 | 91.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:40:08 has no hits.
UFO10686.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:50:53 Download gff for
UFO10686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RB | 73..1188 | 9..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:54 Download gff for
UFO10686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RB | 96..1211 | 9..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:30 Download gff for
UFO10686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RB | 96..1211 | 9..1115 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:30 Download gff for
UFO10686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16264747..16265122 | 9..384 | 100 | -> | Plus |
| 2R | 16265182..16265626 | 385..829 | 100 | -> | Plus |
| 2R | 16265688..16265853 | 830..993 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:54 Download gff for
UFO10686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12152252..12152627 | 9..384 | 100 | -> | Plus |
| arm_2R | 12152687..12153131 | 385..829 | 100 | -> | Plus |
| arm_2R | 12153193..12153358 | 830..993 | 97 | -> | Plus |
