UFO10688.5prime Sequence
1138 bp (1018 high quality bases) assembled on 2012-01-11
> UFO10688.5prime
CAGTCGACATGCAGGAGCTCAAGCAACGTTTTGAGCGACGCCAGTTGGCG
GATGACCTGAAACAAAAACAGGTAATCCAGGATCATCTGCTGCAGAAAAT
CCTGTACTCAAAGCGCCTGCTGGTGGACCATGTGGAGGCACTGGAGCACT
GCATGCAGGAGCTGCAGACAGCCTCCAGTGCGAGTTCCGGCCGGCAATTG
CTGACGACGAGGAACGCCTGCCTGATATTGGGTGGCACTCTGTTGGAGCA
CCTGATAACCCCACGGGGCATCCGGTACACCATGGTTCCATCCATCCTCA
TTTCGGGTACCTTTGCTGCACTGTTCGCTGTGAAGAGCGTCTTCGTTTGC
CGCAACAAAATCGTGGAACGGAAGTTGGAGCAACTGGTCAAGACCATCGA
TGAGTTCGGCAACTGCATCCGTCGAAATATGACGTACTTTCAGGAGATCA
TCATCATGAAACAGGCCGAGCTCATAGAATCCCGTCAAATTGAGCGCGCT
TGGGATTGCATAACGGCCGCCAAGGAGGTTACCGAAATCCTGTACGATGC
CACCCGAAAACTGGAGACGGACTATCCCCTGCCGACAAAGTACAGCGCCT
ACTATGCGCCCATGGAAGAACTGCGGGAGTGCGAGTACTTCAAGAACAAT
GTCACGGACTACAGTCCCAAGCACATAAAAGACTTTCACAACATCTTCGC
CTATGTGCAGTCACAATACCTGCTCCGGCTGGCACTCACCATCACAACTC
GTCCCTCGATCTCTCAGCTGAGCGAGGATCTGGTGAAAATCGACAGCCTG
GTGAGGCAGTTGGTACAAGAGGAGGAGCAGCACTTCAGTAATCTAGCATT
AGCCCTGCAGAACAAGAAGCAATTGGAACTGGCTGAGCTGAATGCGACTA
GAGCAGAGCAACAGCAGAGTGGTGAATTGCTGGGCTGCAGCACTCCTCGC
TAAACTAGCGCTGCATGGTGGCCGTGGCCGCAAATGTCAAGCTCTGGACG
TGACTCTCAAAACTCACTGTCACAGGAGGCGGCAAAAAGAACACTCAAGG
AGCTGGGTGGCTGTGGCAATAATATGCATGGCATCGAAATGCTGCGATTG
CTGTGATGATTTCAGGCGATTGGATGCTGCCTCAAACA
UFO10688.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7705-RA | 2328 | CG7705-RA | 45..1180 | 7..1129 | 5150 | 97.8 | Plus |
| CG7705-RB | 2780 | CG7705-RB | 45..516 | 7..478 | 2360 | 100 | Plus |
| CG7705-RB | 2780 | CG7705-RB | 1171..1632 | 681..1129 | 1780 | 94.6 | Plus |
| CG7705-RB | 2780 | CG7705-RB | 575..777 | 479..681 | 1015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:40:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18676890..18677303 | 478..65 | 2055 | 99.8 | Minus |
| 3R | 32079331 | 3R | 18675818..18676235 | 1089..681 | 1440 | 94 | Minus |
| 3R | 32079331 | 3R | 18676629..18676831 | 681..479 | 1015 | 100 | Minus |
| 3R | 32079331 | 3R | 18677363..18677414 | 73..22 | 260 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:40:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fw2 | 3961 | Fw2 FW2 3961bp | 1430..1494 | 116..182 | 114 | 65.7 | Plus |
UFO10688.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:50:54 Download gff for
UFO10688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7705-RA | 62..1200 | 7..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:58:03 Download gff for
UFO10688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7705-RA | 62..1200 | 7..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:38 Download gff for
UFO10688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7705-RA | 45..1183 | 7..1133 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:38 Download gff for
UFO10688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18675771..18676235 | 681..1133 | 94 | <- | Minus |
| 3R | 18676630..18676831 | 479..680 | 100 | <- | Minus |
| 3R | 18676890..18677296 | 72..478 | 100 | <- | Minus |
| 3R | 18677365..18677412 | 24..71 | 100 | <- | Minus |
| 3R | 18677479..18677495 | 7..23 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:58:03 Download gff for
UFO10688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14502612..14503018 | 72..478 | 100 | <- | Minus |
| arm_3R | 14501493..14501957 | 681..1133 | 94 | <- | Minus |
| arm_3R | 14502352..14502553 | 479..680 | 100 | <- | Minus |
| arm_3R | 14503087..14503134 | 24..71 | 100 | <- | Minus |
| arm_3R | 14503201..14503217 | 7..23 | 100 | | Minus |
