UFO10694.5prime Sequence
1077 bp (892 high quality bases) assembled on 2012-01-11
> UFO10694.5prime
CAGTCGACATGCCAATCGGCATGACGAACATGTCGCCAGCAGCGTCATCA
CTGGTTTTCCTCGCTCTTCTGCAGACAGTTACCTGCTACACCGTCATCAT
CACTGCTCCCGAACAGGCCCTCATCGGATCCACCATCAATGTGTCCGCCC
AGCTCTTCGATGGCGACAAACCGGCTGACGGAGGCAGGCCCTACAGGTTC
ACATGGTCCGACAGTGCTGGCCATCGAAAGGTGATTGAAACGAACAGCGT
TAGCAGCAATTGGTCTGTGGTCTTCACGCAAGAACAACCGGCGACGCATG
TCATCAAGGTGGAAGTGGAGAAGTTCGTCACATTTTTTTGGGTGACGGAG
GCTAAGGCCTCGAGGGGAATCAAGCTGGACAGCTTGCTCGGCGGCAGCCT
GGAGCTGATTCAGAACAATGTGATGCGACCCCATGAGTTTGTGTCCACCC
AGGAGGCGGTGAATCACAGCGTATCACTTTCCGATGCGGACCTACTTTTT
CTGCAGTCGAAGGGTTATCGCATTCTGACGTATTGGTTTCAGAACTGCAC
ATATCTCGGCATGTCCAGTGCGTTGGACTATGTGGCCACATATCCGAAAG
CTGAGCAATATTATGACATGGAGGCGTTAGTGGTGGCTTCACTGGAACTT
CCGCCGGAGCCGACGCCCTCACTACGACGACCACCACCACAACAACCACA
ACTACCACTACCACCACCACTACAACTCCAGCAACAACAACCACTTCGAC
AACACCTGCCACAAACGACCACTCCAAAAACCACAACATCATCCACAAGT
ACAACGACCACAACGACTCCAAATCCGCCCGGCACAATCCAAACGTTGAC
TTTAATCCAGGCCATGCATGCCAACCGCTGCTCTTCTAGGCTTTGACCTT
AAACAGTGCGCTAAACCAGCAAAGTCATCCGGCTTGGAATGTGGTCCGTT
GACTTTGCGTCATTCCGCTGAGAATGCAAAAGGATTCCCAAACTCCACAC
GGTTCCCGGTCCTACGCCAGACTTTCCAATTGCCTGGAGCAAAAAGTTCG
TTCGCCCAGGCACCCAGCGATAAAATC
UFO10694.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16953-RB | 2813 | CG16953-RB | 362..1400 | 9..1060 | 4455 | 96.1 | Plus |
| Muc96D-RA | 2796 | CG31439-RA | 916..1069 | 674..822 | 195 | 77.6 | Plus |
| Muc96D-RA | 2796 | CG31439-RA | 661..814 | 674..822 | 180 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20583557..20584246 | 923..229 | 3055 | 98.3 | Minus |
| 3R | 32079331 | 3R | 20585135..20585291 | 232..76 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 20585403..20585472 | 78..9 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:41:07 has no hits.
UFO10694.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:50:59 Download gff for
UFO10694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16953-RB | 337..1252 | 1..923 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:58:24 Download gff for
UFO10694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16953-RB | 356..1271 | 1..923 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:56 Download gff for
UFO10694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16953-RB | 356..1271 | 1..923 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:56 Download gff for
UFO10694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20583557..20584244 | 231..923 | 98 | <- | Minus |
| 3R | 20585137..20585288 | 79..230 | 100 | <- | Minus |
| 3R | 20585403..20585478 | 1..78 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:58:24 Download gff for
UFO10694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16409279..16409966 | 231..923 | 98 | <- | Minus |
| arm_3R | 16410859..16411010 | 79..230 | 100 | <- | Minus |
| arm_3R | 16411125..16411200 | 1..78 | 94 | | Minus |
