UFO10695.5prime Sequence
877 bp (727 high quality bases) assembled on 2012-01-11
> UFO10695.5prime
CAGTCGACATGCGCGCCACCATCGAGTTCGAGGAGTGCCTGAAGGATTCT
CCCAGATTCAGACAATTTGTTTCCAAGGAGGAGAGCGACATCGAGCACTT
GGAGCAGCGCTTGGAGAAAATCATCAAGCTGTGCAATGTGGCCGTGGACT
CGGGCAAGGAGTATGTCAAGAACCAGAGCGCCTTTGCCATGTCCCTGTGG
GATCTACAACAGCACTTTCTCGACAATAAGAACGCGCACAATGCGCTGGG
CAAGCTGATTCACTGCTTCCAGGAGATGAACAAGTTCCACACCATACTCT
TGGATCAGGCTAGCCGCACGGTGCTTAAAAATCTCAGTGTGTTCGTGAAG
GACGACATTAACCAGGTGAAGGACTATAAGGGACATTTTCTCAAGGTTTC
CGAAGGCTATGACAATGCGCTGATTAAAAACGCTCAGGCCAGCAAAAACC
GACCGCAGGAGATGCAGGATGCTGCCAATATCCTTTCTGCCTCGAAATCG
TGCTTCCAACACACCGCTCTGGATTATGTCAACTATATAACGCTAGCGCA
CGCTCGCAAGGTCCCCTCAATACTATCCACGCTGTTGGATTACTATCAGC
GTGCGTGACCTATTACCACCAGGGCTTCGATCTGTGCAACGACTTCGACG
AGTTCTTTAGAATATCAGCGAGGATTTGAACGCTTTGCGCGGTGACTATC
AGCAGCTGGAGAAAGCCATGCAGAATCGCCATATGAGCGTTAATCGCTAC
TGCTACTCGACACTAATAGCACGTCCACAAGATCGAGGGCTACCTATTCA
GAAGAGTCAAGGGCTTCAGACCTGTGCCGACGATGGTCTACCTCACGATG
CCAGTAGTATTATAGAAAACGCACAAC
UFO10695.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CenB1A-RA | 3464 | CG6742-RA | 390..1266 | 9..873 | 3920 | 97.5 | Plus |
| CenB1A-RB | 2565 | CG6742-RB | 41..316 | 580..845 | 1085 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23121336..23121559 | 581..800 | 875 | 96.9 | Plus |
| 3R | 32079331 | 3R | 23120611..23120782 | 267..438 | 860 | 100 | Plus |
| 3R | 32079331 | 3R | 23120839..23120985 | 435..581 | 705 | 98.6 | Plus |
| 3R | 32079331 | 3R | 23120264..23120383 | 59..178 | 600 | 100 | Plus |
| 3R | 32079331 | 3R | 23120459..23120555 | 177..273 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 23118789..23118841 | 9..61 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:41:16 has no hits.
UFO10695.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:50:59 Download gff for
UFO10695.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cenB1A-RC | 387..1268 | 9..877 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:58:28 Download gff for
UFO10695.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CenB1A-RA | 390..1271 | 9..877 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:00 Download gff for
UFO10695.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CenB1A-RA | 390..1271 | 9..877 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:00 Download gff for
UFO10695.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23118789..23118841 | 9..61 | 100 | -> | Plus |
| 3R | 23120267..23120383 | 62..178 | 100 | -> | Plus |
| 3R | 23120461..23120554 | 179..272 | 100 | -> | Plus |
| 3R | 23120617..23120781 | 273..437 | 100 | -> | Plus |
| 3R | 23120842..23120985 | 438..581 | 98 | -> | Plus |
| 3R | 23121337..23121621 | 582..854 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:58:28 Download gff for
UFO10695.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18944511..18944563 | 9..61 | 100 | -> | Plus |
| arm_3R | 18945989..18946105 | 62..178 | 100 | -> | Plus |
| arm_3R | 18946183..18946276 | 179..272 | 100 | -> | Plus |
| arm_3R | 18946339..18946503 | 273..437 | 100 | -> | Plus |
| arm_3R | 18946564..18946707 | 438..581 | 98 | -> | Plus |
| arm_3R | 18947059..18947343 | 582..854 | 94 | | Plus |
