UFO10696.5prime Sequence
1107 bp (901 high quality bases) assembled on 2012-01-11
> UFO10696.5prime
CAGTCGACATGACGTGCAGCAGGATGTGGATCAGGAGTCGCTGGCTGGGC
CTGCTGCTCCACTATTGGCTGGTCGTGGTTACGCAAGGCGGTGGCGTACG
TCCGCTTTACGGACTCCATTCCGACGAACTGGTGGCGGGTGAGGGGCAGT
TGGTGGTGCCACGACGCGTTCATCCCGATGGTGCGTTTATGACCCACCAA
TTGGAGTACGCACACGAACTGGATCATCGGCGGCATCGGCAGAGGCGCAG
CCTGAACTCGGAACACGATACCCAGGCGGCGGACCTGCATCTGCTGTTGC
CGCTGGCGAACGAGACACTGCATCTGGAGCTTATGGCGCACAGCTACTTT
CTGGCCCCGAATCTGGTGGTGGAGCGCCACCGGCGGGATCTGCGCACTCG
GTCACCGTTGACAACGCGGCACCTCAACTGTCACTTCCATGGAAAGGTGC
GCGGCCAACCGGCCACCAATGTGGCCATCTCCACATGCGCCGGACTGGTG
GGTCACATCCGGACGGCAGGCAATGAGTACTTCATTGAGCCCTCGAAGGA
GCACGAGCCGCATCCGGTCAACGGGCATCCGCACGTGGTCTTCCAGCGCT
CCTCCGTCAAACCGAAGCATTCGTTGCGAAAGCGAAACAAGCGCAAGCGG
GGCGGCAAATCGGGGATCCGGAGCCGAGGTCAGCAATTGCGGCACGCGGG
GAGCCACGCCGTCAAATGGAGACGAGACTGGAGTGGCAGGCCAGGGGCAA
GGTGAAGGTCCAGGGAGGCCGTCAAATTAAGGCGCCACCCATCACCACCA
CCACCATCATCATCACCAAGCACAAGGTACCCGGCCATCATCAGCAGAAA
ATGAGCAGAATGTTCCGCCACACCCAAGTTCAAAGGTACGAAGACGCAGT
TTCCCGAACGGAGCCCGGAATCCACGCAGAGATTCCCCCGGCGGCAGGCG
ATCCATCAGCAGTCCACGGCATGGTGAAGACGCCTCATCGTGGCCCGATG
GCAACCATGGTCGGGCGTTTCACAGGACCCTCAACCGGCCTATCTGGCCT
GAACCATCAATGAACATGGGTGTCCCGCCTTTGTGTACCAGGGATCTCCC
AGACATT
UFO10696.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4096-RC | 3372 | CG4096-RC | 185..1217 | 8..1075 | 4410 | 96.1 | Plus |
| CG4096-RB | 3920 | CG4096-RB | 729..1761 | 8..1075 | 4410 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5703115..5703607 | 8..500 | 2465 | 100 | Plus |
| X | 23542271 | X | 5703828..5704063 | 616..859 | 825 | 95.9 | Plus |
| X | 23542271 | X | 5703655..5703775 | 497..617 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:41:23 has no hits.
UFO10696.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:00 Download gff for
UFO10696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4096-RC | 179..1193 | 1..1046 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:58:32 Download gff for
UFO10696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4096-RB | 723..1737 | 1..1046 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:04 Download gff for
UFO10696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4096-RB | 723..1737 | 1..1046 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:04 Download gff for
UFO10696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5703109..5703604 | 1..497 | 99 | -> | Plus |
| X | 5703656..5703775 | 498..617 | 100 | -> | Plus |
| X | 5703830..5704228 | 618..1046 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:58:32 Download gff for
UFO10696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5597142..5597637 | 1..497 | 99 | -> | Plus |
| arm_X | 5597689..5597808 | 498..617 | 100 | -> | Plus |
| arm_X | 5597863..5598261 | 618..1046 | 91 | | Plus |
