UFO10702.5prime Sequence
865 bp (864 high quality bases) assembled on 2012-01-17
> UFO10702.5prime
CAGTCGACATGCTCCTCAGCTCGCCGCTGAGTAAAAACCCAGTGGTGCAG
CGCAGCCTGGACTTGCGATTGCAGGGCGCCCAAGCGCGGCATTACCTCAA
GTGGTGCTCCATAAATGTGGTGCTGCTGTCGCTACTCCTCTTCGACCTCT
GGCAGGCATGTCGGTCCGCCTACAGGACCTACTGGTTCCTGGCGGAGTGC
ACCATTACGACCCTGATTGGCCTAAGTGCACTCGCCTGCTTCGGCAAGTA
TTTGTGGTTATGGTTTGGTGGTGACCAAGTTACGGGTAGCGATATCCAAA
AGTGGCTGCTTGATGGCAAGGCAGAGAACTCTTTTCGTACAGTTTGCTCC
CGAGCCGTGATGAAACCACGCAGCTACGAACCGGATAGCGATATAGAGGA
CGACATACCCATCATCAACTGGCACTCCTCCTTCGAGGACTCCTGCTGGG
GCTCGCAATCCATGCGCCGCAGCCCCAGTCCCACAAGGACGCCGCAGCAG
ACGAAACAAAACACCTCTTACAACTCCTCGATGGTTCGAAACAACTCGCT
GAATGCCAGCAATCTGAGCAACGAGTCTACCTATATGTCCCCGTATGCGG
AGGTGCGACGCGATGACTTCATGACCGATACACGAAAGTTGACCAGTCTA
ATGAAGCAGGCGGATCGGGAGCGCAGCATGATGGACAGCTCGGATACACC
CAATGTGCAGAGCATGGGATCGGCCAACTCCTTCTGGAATTACTGCACAA
TGCGGCCTATATGCTCAAGACCACCATCTATCACTATCGCCACCTCCGGC
TGTTTCTACGGAAAATGCTCCCACCTCGATTTGAGGAGTTTGGCGGTATT
CAGTTTAGGGAACAG
UFO10702.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6479-RB | 1791 | CG6479-RB | 26..879 | 9..861 | 4185 | 99.5 | Plus |
| CG6479-RA | 1861 | CG6479-RA | 106..949 | 19..861 | 4135 | 99.5 | Plus |
| CG6479-RC | 1843 | CG6479-RC | 106..931 | 19..861 | 3855 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17338199..17338738 | 861..323 | 2540 | 99.3 | Minus |
| 3L | 28110227 | 3L | 17338796..17339111 | 324..9 | 1580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:55:58 has no hits.
UFO10702.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:31 Download gff for
UFO10702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6479-RB | 21..882 | 1..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:05 Download gff for
UFO10702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6479-RB | 21..882 | 1..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:57 Download gff for
UFO10702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6479-RB | 21..882 | 1..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:57 Download gff for
UFO10702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17338196..17338736 | 325..865 | 99 | <- | Minus |
| 3L | 17338796..17339116 | 1..324 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:05 Download gff for
UFO10702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17331296..17331836 | 325..865 | 99 | <- | Minus |
| arm_3L | 17331896..17332216 | 1..324 | 99 | | Minus |
