UFO10706.5prime Sequence
1187 bp (997 high quality bases) assembled on 2012-01-17
> UFO10706.5prime
CAGTCGACATGGACAAGGATGCGTTTACATTACAGGCCATACGGCAGGAC
CTTATCGATAACAATCTGCAGGCTAAGGCAATAATACACGACATCCTGAA
CAGCCGCACCTCCATCGCCGAACTCGAGGAGCTGAACGAAGCGGGCCGCT
CCAAACTGTCTGCTATCCGCAAAAGCATCGAGCGGCTGGACGACTGGGCG
CGGGACACGGCAGACTCTGCGCTGGCCAATGAAGTGGACGACCACCGTGA
TCAGTTCTCCAAAACGCTGCAGGCGTTCCGAAAAGCAAACGTGTCCACGA
TGCTGGAGATCGAGAAGGCCAATCGGGAGGAGTTAATGGCCATTACCGGC
GAGAGTGAGCTACGCCAACGAACCACAACACGGGCGCGGCACAACCAGGG
CAGTCTGGTTTCGCAGGAGAACGACGTGACCGAGAAGATGCTGGCTATAT
CGCGGCACCTCTCGGAGACCACCCAGAAGAGCGCCATCACCCTGGAAACG
CTCGTGGCCTCGTCGCAAAATGTGGAGGCCACCAGCGACGAACTGCACCA
CACGGCCGGCAGCATTAGCATGTCCGGCAAGCTGCTCAAAAAGTACGGAC
GACGCGAGTGCACTGACAAAATGCTGCTCTTCTTCGCCTTCTCCTTGTTC
CTCGCCTGTGTCTTTTACATCGTCCAAAAGCGACTCTTCGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGGCGGCAACCGAGCGTTC
TGAACAATCCAGATGGAGTTCTGAGGTCATTACTGGATTTATCAACAGGA
GTCCAAGCGAGCTCGATTATCAAATTACGCCCCGGCCTGCCACTCATCGC
AGTACTGTTGTTATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAA
ACCGGCTTGATGATCCTGATTCCGCCACCGGCATCAGCACCTTGTCGTCT
TTGCGTATAAATATTTGCCCATGTTGAAACGGGGGCGAAGAGTTGTCCCT
ATTGCCACGTTAATTCAAACTGGTGAACCTCACCAGGATTGCTTAAAACG
AAAACATATCTCTTAATAACCCTTTTAAGGAATGCGC
UFO10706.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2023-RA | 2426 | CG2023-RA | 61..744 | 6..689 | 3420 | 100 | Plus |
CG2023-RB | 953 | CG2023-RB | 89..772 | 6..689 | 3420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5823708..5824307 | 689..90 | 3000 | 100 | Minus |
3R | 32079331 | 3R | 5824360..5824444 | 90..6 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:56:20 has no hits.
UFO10706.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:33 Download gff for
UFO10706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2023-RA | 56..748 | 1..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:17 Download gff for
UFO10706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2023-RA | 56..748 | 1..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:07 Download gff for
UFO10706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2023-RB | 84..776 | 1..694 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:07 Download gff for
UFO10706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5824361..5824445 | 1..89 | 95 | | Minus |
3R | 5823704..5824307 | 90..694 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:17 Download gff for
UFO10706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1649426..1650029 | 90..694 | 99 | <- | Minus |
arm_3R | 1650083..1650167 | 1..89 | 95 | | Minus |