UFO10707.5prime Sequence
1028 bp (792 high quality bases) assembled on 2012-01-17
> UFO10707.5prime
CAGTCGACATGTCCCCCAGTCAACAGACGCCCCAGGAGACGGTGGTGGCC
CCCGTGGCCCCGCTGCTGGAGGATCAGCTGGAATTGGACATGAAGCACTG
CTTTGAGAACCTGATCGTCATCGACGTGGGTGCGAATCTGACCAACAAGA
AGTATAGCCGTGATCTGGATTCCGTGGTGCAGAGAGCCAGAGACGCAGGT
GTCCAGAAACTAATGGTTCACGGCACTTCGGTCAAATCGAGCAAGGAAGC
GCTGCGCCTTTCGCGCATCTATCCCGACATAATCTACTCAACTGCTGGCA
TTCACCCGCACGACTCCAAGTCCATCGTGGAAGAGCCGGCCACGTGGTTC
GATCTGGAGCACATCGCCCAGGCGCAGGAGTGTGTGGCGATTGGCCCCTG
CGGCTTGGACTACCAGCGGGACTTCTCCGAACCGGACGCCCAGAAGCAGA
TCTTCGCCAAGCAGCTGCATCTGGCCATCCGGCTAAATAAACCTCTGCTG
ATCCCACGAGCGGTCGGCTCAGCTCGATTTACTCGAAATACTAGACAAAA
TTCGAGAATCTTCCCGCCTGTGATCATCAGAGGTTTTATGGGCACCGCCG
AGGAGGCGCTTAAAGTACCTAGACCGGAGGTTCTACTTCAGCCTGACGGG
CTACCTGTGCAGGACAAATCGGATACTGGCGTTCCGCCGCCTGCTGGAGA
CGGCACATTGCCGCTAGACAGACTACTGGTGGAGACGGATGCTCCTTTCA
TGTACCCAAACACAAGGGCTTCCAGGCTACCGAACACGTGAAAGACTGGT
ATCACCGACCGCTCATTGTTGTACTTACACAGATATTGTACCTTTCCAAC
GTAACGAGCCGTGCATTTTGACCGCATTTGTAAAGATGATACTCGCCTTT
CATGAAGAAAGCCCGGACGAGGGCTTTGGCCACTGCCTTTATGGCCCTGA
ACTTGTTTGGCTTGTCCGCAAGCTTTTCTACAACCTTCCTTTGGCGCGCG
GGGCCCAGTTAAGTGGACTTAACCCTAT
UFO10707.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3308-RA | 2124 | CG3308-RA | 286..1244 | 7..967 | 4240 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21272487..21272839 | 548..195 | 1720 | 99.7 | Minus |
| 3R | 32079331 | 3R | 21272155..21272436 | 832..550 | 1035 | 96.5 | Minus |
| 3R | 32079331 | 3R | 21273339..21273532 | 200..7 | 940 | 99 | Minus |
| 3R | 32079331 | 3R | 21271958..21272096 | 967..830 | 310 | 87.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:56:27 has no hits.
UFO10707.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:34 Download gff for
UFO10707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3308-RA | 280..1242 | 1..967 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:22 Download gff for
UFO10707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3308-RA | 282..1244 | 1..967 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:11 Download gff for
UFO10707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3308-RA | 282..1244 | 1..967 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:11 Download gff for
UFO10707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21272155..21272436 | 549..832 | 96 | <- | Minus |
| 3R | 21272487..21272835 | 199..548 | 99 | <- | Minus |
| 3R | 21273341..21273536 | 1..198 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:22 Download gff for
UFO10707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17097877..17098158 | 549..832 | 96 | <- | Minus |
| arm_3R | 17098209..17098557 | 199..548 | 99 | <- | Minus |
| arm_3R | 17099063..17099258 | 1..198 | 97 | | Minus |
