UFO10713.5prime Sequence
673 bp (672 high quality bases) assembled on 2012-01-17
> UFO10713.5prime
CAGTCGACATGATGACCGCCCATGTGGATATCGCTGTTCAAAGTCCTGCT
GCTGCTGTTCGCCTTCTTTGCCACGACGTCCGCGGACAGTGCACCCTTCA
TGCCCATACCCACCCAGCACGACGATCCGACCCAGAAACAGAAACAGAAT
CAGAATCAATCTCCGATACCCGAAACGAACCGCCATTACCATCAGTATCA
CAGCCTGATCCAACCAGATCAGTACTTCAAAGTGCAGCGCTCCCCGAATG
GAAAGCTGAATCTGGTCTTTAACGATACGTTCGTATCTTTGCAGAGGACG
GACACGGAGGTGCAATCCGAACAGCCGATACCCCCCCGACATCCATCGGA
TACCTTTGTCTTCCCCGATTCCCCCATAGCCAAGTATCGGCCACCACAAT
CCCCAGCTCGTCCTTTGAGGAATGACACTAAGGAGCACAATCCCTGCGCC
AAGGATGAAAGCCAACACCTTAGAAACTTCTGCACGAATGTGGACGACTA
TCCGGACCTTTCAGGCCTCACACATAAGCTAAAAAACAACTTCGCCAAGT
TCTTTAGCAACGATCTTCAGCCCACGGATGTGAGCTCTCGCGTTGGTGGC
TCAGATGAGCGATTCCTTTGCAGGAGCATCAGGAAGCTTGTGTAACCCAA
AAAAGGGCTTGAGGGCGGACGAC
UFO10713.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:57:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spz-RB | 2050 | CG6134-RB | 861..1524 | 8..673 | 3220 | 99.1 | Plus |
| spz-RA | 2128 | CG6134-RA | 1006..1602 | 76..673 | 2905 | 99.2 | Plus |
| spz-RD | 1969 | CG6134-RD | 1063..1443 | 292..673 | 1825 | 98.7 | Plus |
| spz-RA | 2128 | CG6134-RA | 861..927 | 8..75 | 315 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:57:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27066161..27066480 | 673..353 | 1495 | 98.4 | Minus |
| 3R | 32079331 | 3R | 27066608..27066885 | 352..75 | 1390 | 100 | Minus |
| 3R | 32079331 | 3R | 27069144..27069202 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:57:02 has no hits.
UFO10713.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:37 Download gff for
UFO10713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz-RB | 849..1522 | 1..673 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:44 Download gff for
UFO10713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz-RB | 851..1524 | 1..673 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:30 Download gff for
UFO10713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz-RB | 851..1524 | 1..673 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:30 Download gff for
UFO10713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27066608..27066884 | 76..352 | 100 | <- | Minus |
| 3R | 27069144..27069216 | 1..75 | 94 | | Minus |
| 3R | 27066161..27066480 | 353..673 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:44 Download gff for
UFO10713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22891883..22892202 | 353..673 | 98 | <- | Minus |
| arm_3R | 22892330..22892606 | 76..352 | 100 | <- | Minus |
| arm_3R | 22894866..22894938 | 1..75 | 94 | | Minus |
