UFO10714.5prime Sequence
1152 bp (1046 high quality bases) assembled on 2012-01-17
> UFO10714.5prime
CAGTCGACATGCAGAGCGACTTTCACAGAATGAAGAACTTTGCCAATCCC
AAGTCCATGTTCAAAACCAGCGCCCCCAGCACCGAGCAGGGTCGTCCGGA
ACCACCAACTTCGGCTGCAGCGCCCGCCGAGGCTAAGGATGTCAAGCCCA
AGGAGGACCCACAGGAGACTGGTGAACCAGCAGGCAACACTGCAACCACT
ACTGCTCCTGCCGGCGACGATGCTGTGCGCACCGAGCATTTATACAAACA
CCCGCTCATGAATGTCTGGACGCTGTGGTACCTTGAAAACGATCGGTCCA
AGTCCTGGGAGGACATGCAAAACGAGATCACCAGCTTCGATACCGTCGAG
GACTTCTGGAGCCTATACAACCACATCAAGCCCCCATCAGAGATCAAGCT
GGGTAGTGACTACTCGCTATTCAAGAAGAACATTCGTCCCATGTGGGAGG
ATGCAGCCAACAAACAGGGCGGTCGTTGGGTAATTACCCTTAACAAAAGC
TCCAAGACCGATCTGGATAACCTATGGCTCGATGTGCTGCTCTGCCTGAT
TGGTGAGGCCTTCGATCACTCCGATCAGATCTGCGGCGCTGTTATAAACA
TTCGCGGCAAGAGCAACAAGATATCCATCTGGACTGCCGACGGAAACAAC
GAGGAAGCTGCCCTTGAGATTGGTCACAAGCTGCGCGATGCCTTGCGTCT
GGGACGCAACAACTCGCTGCAGTATCAGTTGCACAAGGACACGATGGTCA
AGCAGGGCTCCAACGTGAAATCGATCTACACTTTGGCAAGCTTTCTAGAC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATATCATAATCATAATC
ATAATCATAATCACAACTAGGCTAGGAGATCCTGGTCATGACTAGTGCTT
TGGATTCTCACAATAAAAAACGCCCGGGCGGCAACGAGCGTTCTGAACAA
TCCAGATGGAGTTCTGAGTCATTACTGGATCTATCAACAGGAGTCAAGGC
GAGCTCGATATCAAATACGCCCGGGCCTGGCACCTCATCGCAGTACTGTT
GAAATTCATAAGCATTCTGCGACTGGGAAGCATCAAACGGCATGGATGAA
CCTGATACGGCAGGCGAATTGGCACCTTGTCGCTTGGCTATAAAATTGCC
CA
UFO10714.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-4E-RI | 1793 | CG4035-RI | 760..1538 | 7..785 | 3850 | 99.6 | Plus |
| eIF-4E-RH | 1492 | CG4035-RH | 459..1237 | 7..785 | 3850 | 99.6 | Plus |
| eIF-4E-RD | 1723 | CG4035-RD | 690..1468 | 7..785 | 3850 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:57:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9400583..9400953 | 436..66 | 1855 | 100 | Minus |
| 3L | 28110227 | 3L | 9399873..9400033 | 785..625 | 790 | 99.4 | Minus |
| 3L | 28110227 | 3L | 9400419..9400519 | 536..436 | 490 | 99 | Minus |
| 3L | 28110227 | 3L | 9400097..9400185 | 624..536 | 430 | 98.9 | Minus |
| X | 23542271 | X | 1158961..1159338 | 643..266 | 375 | 73.3 | Minus |
| 3R | 32079331 | 3R | 29026520..29026848 | 634..306 | 355 | 73.9 | Minus |
| 3L | 28110227 | 3L | 9401040..9401098 | 65..7 | 295 | 100 | Minus |
| 3L | 28110227 | 3L | 6665168..6665336 | 435..267 | 290 | 78.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:57:11 has no hits.
UFO10714.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:38 Download gff for
UFO10714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-4E-RE | 481..1270 | 1..791 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:47 Download gff for
UFO10714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-4E-RD | 684..1473 | 1..791 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:33 Download gff for
UFO10714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-4E-RD | 684..1473 | 1..791 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:33 Download gff for
UFO10714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9401040..9401103 | 1..65 | 95 | | Minus |
| 3L | 9399868..9400033 | 625..791 | 97 | <- | Minus |
| 3L | 9400097..9400184 | 537..624 | 98 | <- | Minus |
| 3L | 9400419..9400518 | 437..536 | 99 | <- | Minus |
| 3L | 9400583..9400953 | 66..436 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:47 Download gff for
UFO10714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9392968..9393133 | 625..791 | 97 | <- | Minus |
| arm_3L | 9393197..9393284 | 537..624 | 98 | <- | Minus |
| arm_3L | 9393519..9393618 | 437..536 | 99 | <- | Minus |
| arm_3L | 9393683..9394053 | 66..436 | 100 | <- | Minus |
| arm_3L | 9394140..9394203 | 1..65 | 95 | | Minus |
