UFO10715.5prime Sequence
914 bp (912 high quality bases) assembled on 2012-01-17
> UFO10715.5prime
CAGTCGACATGCTTAATGCGCGTGACGTGTGTCCTGAGGGCAACGACGAC
CAGCAGTTGGACCACAATTTTAAGCAGATGGAGGAGCATTTGGCCTTAAT
GGTGGAAGGCAATGAAAACGAAGATCCGAGGAAAGCCACTTGTGAGTACG
AGGATACGAACGAAGATGGTGCAACCTGCACATCGGGCGTTTTATCCGAA
ATCCAGGAGAACTTCGGTAGACTCCGGTTGTGTGACGTTACTGCACCACT
CCTCGAATTCCACGGTTTGGATTGCTTGCAACAGATTCAAAAGCGCTCGC
GCCATTTTGCATTCGACGGTTCTCCGGCCAAGAAGTCGCGATCCGGAGGC
GTGTTGGTCACCGGGCCAAAGCAGAAGCAACTGCAGAAGGAAAATGTGTG
GAACCGGAAGAGTAAAGGCTCTGCGTCCGCGGATAATATTGAGAAACTGC
CCATAACTATTGAGAAACTGCATATGATTGGTCTGCACGGCGATTGCTTA
GAGCACAACGCCGTGCTGCGTTTGATGAATCTGTTCAGATCCCTGCATGA
TCACCTGACCGCCGATTTGGGCTTCTCGCGCCAAAACTCAATGCCCTCGG
ACTATCTGTTCGATATGCCGGTGAAGAGCACGATGCCTAAGAGCTTGAAT
GTGCGCTACCAACTGCAGGTGCTGTGCACCAAAGTAGAGCGCTTCCTTGT
CCAGCAGCGCCGCACCTTGGGAGGGCGAATCGCCACTTCGATTTCGAGAA
ATACGACGAGTGTGACAAGTTGCTTAAGGGTTTCGCATCCTATTTGGACA
CTTCAAACTGCTTTTAAAGCCCAAAATGCGCAATCGAAACGGAACTCGGG
GAGCAATGCGGACAGTTCCATACTCAGCGCATGGAGAGATTGCTAATTGG
TCTGCGCGATTGAA
UFO10715.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:57:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bam-RA | 1894 | CG10422-RA | 82..986 | 9..912 | 4395 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:57:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25244489..25244976 | 496..9 | 2425 | 99.8 | Minus |
| 3R | 32079331 | 3R | 25244057..25244425 | 864..496 | 1675 | 98.7 | Minus |
| 3R | 32079331 | 3R | 25243947..25243992 | 912..867 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:57:21 has no hits.
UFO10715.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:39 Download gff for
UFO10715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bam-RA | 187..1093 | 9..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:51 Download gff for
UFO10715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bam-RA | 82..988 | 9..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:37 Download gff for
UFO10715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bam-RA | 82..988 | 9..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:37 Download gff for
UFO10715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25243945..25243992 | 867..914 | 97 | <- | Minus |
| 3R | 25244054..25244424 | 497..866 | 98 | <- | Minus |
| 3R | 25244489..25244976 | 9..496 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:51 Download gff for
UFO10715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21069667..21069714 | 867..914 | 97 | <- | Minus |
| arm_3R | 21069776..21070146 | 497..866 | 98 | <- | Minus |
| arm_3R | 21070211..21070698 | 9..496 | 99 | | Minus |
