UFO10717.5prime Sequence
1128 bp (994 high quality bases) assembled on 2012-01-17
> UFO10717.5prime
CAGTCGACATGCTGGATATCGCTGCACAACTCCTTGCCGTGGGCCTCTTG
TGGGGCGTTACCAATCCGTTTATTCGCCTCGGCAGCCAGGGAATCGAGTC
GGTTGGTGATACGGGCTCAAAGTGGCGTAACTTTGTCCAGGAGGCACGCA
CAATCGGCTCCCGGTGGCGCTATTGGATACCCTTCGGTCTCAACCAGTGC
GGGAGTGCTCTGTACGTTTGGACGCTCCAGAGGGCCAGTATTACAGTGGC
GGTGCCAGTGGCCAATTCCCTGAGCTTCGCATTTACGGCAATCACCGGAT
ATGCGCTGGGGGAAAAACTGCCGGGAAGAAAAGTCATTCTGGGCACCCTG
CTCGTCTGCTGTGGCAGTATCCTGATGATATACGATAAGATTTTGCAGGA
ACAGGCCCAGCACCAGCTAAATATAACATTCCACGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACT
GTTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGC
ATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTAT
AATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCC
ACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAA
AAACATATTCTCATTAAACCCTTTAAGGGAAATAGGCCAGGTTTCACGGT
ACACGCACATCTTGCCGAATATATGTGTAGAACTGCCGAATCGTCGTGTT
TCACTCAGAGCGATGAAACGTTCAGTGTTGCTCATGAAAAACGTGTACAA
GGGTGAAACTCTTGATATCACAGCTCACCGTCTTTCATTGCCATACGAAA
TTCGGATGACCATTCATCAGGCGGTCAG
UFO10717.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:57:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12929-RA | 493 | CG12929-RA | 50..475 | 9..434 | 2130 | 100 | Plus |
| CG12929-RB | 551 | CG12929-RB | 50..371 | 9..330 | 1610 | 100 | Plus |
| CG12929-RB | 551 | CG12929-RB | 430..533 | 331..434 | 520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:57:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9586290..9586596 | 330..24 | 1535 | 100 | Minus |
| 2R | 25286936 | 2R | 9586128..9586231 | 434..331 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:57:29 has no hits.
UFO10717.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:39 Download gff for
UFO10717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12929-RA | 4..443 | 1..442 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:56 Download gff for
UFO10717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12929-RA | 43..482 | 1..442 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:40 Download gff for
UFO10717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12929-RA | 43..482 | 1..442 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:40 Download gff for
UFO10717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9586128..9586231 | 331..434 | 100 | <- | Minus |
| 2R | 9586290..9586595 | 25..330 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:56 Download gff for
UFO10717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5473633..5473736 | 331..434 | 100 | <- | Minus |
| arm_2R | 5473795..5474100 | 25..330 | 100 | <- | Minus |
