UFO10723.5prime Sequence
1077 bp (1002 high quality bases) assembled on 2012-01-17
> UFO10723.5prime
CAGTCGACATGGCTTTCGCCGGACTCAAAAAGCAGATCAACAAGGCCAAC
CAGTATATGACGGAGAAGATGGGCGGTGCCGAGGGCACCAAACTGGACAT
GGACTTCATGGAGATGGAACGCAAGACGGACGTCACCGTGGAGCTAGTGG
AGGAGCTGCAGCTAAAGACGAAGGAGTTCCTGCAGCCGAATCCAACGGCA
CGGGCCAAAATGGCAGCGGTCAAGGGCATCTCGAAGCTGTCCGGACAGGC
CAAGTCCAATACGTATCCGCAACCGGAGGGCCTGCTCGCGGAATGCATGC
TGACTTATGGGAAGAAGCTCGGCGAGGACAACAGCGTGTTCGCGCAGGCG
CTCGTCGAATTCGGCGAAGCGCTGAAACAGATGGCCGACGTCAAGTATTC
GCTGGACGACAACATCAAGCAGAACTTTTTGGAGCCACTGCATCATATGC
AGACCAAAGACCTCAAGGAGGTAATGCATCATCGCAAGAAGCTGCAGGGC
CGGCGGCTAGACTTTGACTGCAAGCGTCGCCGACAGGCCAAGGACGATGA
GATTCGTGGTGCCGAGGACAAGTTCGGTGAATCGCTCCAGCTGGCCCAGG
TGGGCATGTTCAATTTGCTCGAGAACGATACGGAGCATGTCTCCCAGCTG
GTCACCTTTGCCGAGGCACTATACGATTTTCATTCGCAATGCGCGGATGT
CCTTCGAGGCCTGCAGGAGACACTGCAGGAGAAGCGCTCCGAGGCGGAGA
GCCGGCCACGCAACGAGTTCGTGCCCAAGACGCTGCTCGATCTGAACTTG
GACGGCGGTGGCGGCGGCCTCAACGAAGATGGCACGCCGTCTCACATTAG
TTCGAGCGCCTCGCCGTTGCCCTCGCCGATGCGTTCGCCCGCCAAGTCGA
TGGCCGTAACGCCGCAGCGCCAGCAGCAGCCCTGCTGCCAGGCCCTCTAC
GACTTCGAGCCGGAGATTCCCGCCGACTGCCTTCAGAGACGACATTATCA
CCCTTGTGATCGCGTCGACGACATGCTCGAGGGGCGCGGTGATACCGCCA
CCGGTTACTTCCCGCAGTCTATGTTTC
UFO10723.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoA-RC | 3913 | CG14296-RC | 479..1556 | 8..1075 | 4980 | 98.1 | Plus |
| EndoA-RB | 3740 | CG14296-RB | 658..1735 | 8..1075 | 4980 | 98.1 | Plus |
| EndoA-RA | 3561 | CG14296-RA | 479..1556 | 8..1075 | 4980 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18907266..18908234 | 8..976 | 4815 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:56:48 has no hits.
UFO10723.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:36 Download gff for
UFO10723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoA-RB | 650..1735 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:36 Download gff for
UFO10723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoA-RA | 472..1557 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:23 Download gff for
UFO10723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EndoA-RA | 472..1557 | 1..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:23 Download gff for
UFO10723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18907259..18908344 | 1..1077 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:36 Download gff for
UFO10723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14732981..14734066 | 1..1077 | 97 | | Plus |
