UFO10724.5prime Sequence
955 bp (944 high quality bases) assembled on 2012-01-17
> UFO10724.5prime
CAGTCGACATGTCGTTCAAGGCCGTCCCCCTTTTGTTGGCTATCGGCGCC
GTCTTCGTGGCTGCCGTGCCCACTCCCGTCGAGACCGAGAGGGAGTCCTC
GCTGGTGGAGCTCCTGCTCAGTTCTCCGGCCATGCGATCGGATCTCTTCA
ACGTCGAATGCGTGGACTACTACAGCCCGCTCCTTAAGGGTCACGTGGAC
AAGTACAACGAGGACTTCACCGCGTGCAAGGACAATTACGACGGGGCCTT
CTCCCTGATCGACTCAAGCTACCGCAGTTCCCGCGACGAGCTGTCCGTAT
CCGTGAGGGACACCTGCCTTTCCCTCCTGACCTGCAATGGCAGGACCTCG
AACTCCGATGCCTTCGAGTGCTTGGCCTCTGGGGGTCCTTCGGCATCCAA
GGAACTGGAGAAAGCTTCCTACAACGCATCCGACAACCAAACCAGCCTGC
TCGCCGAGGTGTCCGTAATCTCGGAAACGCTATCCAGATGCCAAATCGAA
GCCTACCGGACCTACAACACCAACCACGGCGAGTGCTACGCCGACATGGT
AGCCTGCCTGGGTGATCCCAACTGGGAGTTTCCCAGCACGAACTACGTGC
TCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAAGTGG
TCATAATCATAATCATAATCATAATCATAAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAATCCAGATGGAGTTCTGAGGTCATTACTGG
ATCTATCAACAGGAGTCCAAGCGAGCTCGATATTCAATTACGCCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTATTCATTAAGCATTCTGCCGGACAT
GGAAGCCATCACAAACCGCCATGATGAACCTGAATCGCCAGCGGGCCTCC
GCACC
UFO10724.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31041-RA | 700 | CG31041-RA | 25..618 | 9..602 | 2970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29590507..29590882 | 384..9 | 1880 | 100 | Minus |
| 3R | 32079331 | 3R | 29590152..29590371 | 602..383 | 1100 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:56:55 has no hits.
UFO10724.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:37 Download gff for
UFO10724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31041-RA | 17..618 | 1..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:39 Download gff for
UFO10724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31041-RA | 17..618 | 1..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:26 Download gff for
UFO10724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31041-RA | 17..618 | 1..602 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:26 Download gff for
UFO10724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29590152..29590370 | 384..602 | 100 | <- | Minus |
| 3R | 29590508..29590889 | 1..383 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:39 Download gff for
UFO10724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25415874..25416092 | 384..602 | 100 | <- | Minus |
| arm_3R | 25416230..25416611 | 1..383 | 98 | | Minus |
