UFO10725.5prime Sequence
974 bp (963 high quality bases) assembled on 2012-01-17
> UFO10725.5prime
CAGTCGACATGAAGCGCGACGTGTCCACGTCGACCATCGGCCGGGATGAG
GCCCGTCGTCCGCTGATGGAGGCCTACATGTTCCAGCGGCGCGTGCTGCT
CGGCTGCAGTCTGCTCATGGTGGTTTCGCTGCTAATCTGGATAGTGGCCA
TCTCGACCGATCACTGGATCATCATATCCGGCGGAAAGGGCATTTTTATA
CCCGAATCTCGACGCTTCTTTATGTCCTCGCACTCGGGCTTGTGGCGCCA
CTGCCGGAACACGATAGTGCCCAATGCCATGAGCAATGCCCAGGTGGTGC
GCAACTTTAGCTCCATGTCGTACACATCGCAGACGAACATCAACGAGGCG
AAGCGGAATCTCTCGCAAATGGACTTCATCAAGGAGTTCGCGCACGAGAA
GCTGGAAACGTCGGACAACTTTACGGAATCGGCGCGTCGCCACATGTTTG
CCCATTGGGTACGGGGCGAGGATATGGAGTTCCAGACGCTGCGCCATGCC
TTTCGCACCCTGGTGATGAACACCGAGGAGAATCAGCGGCAGTTTAATGC
CACGGCCATTAAGCCCATACCCATCAATCCGCTGGACGTGCAGGGAATCA
TTGAGAGAAATACTTTCGGTTCGGCGCTGCAGCGGGTTAAGTACAACAAC
ACTTGGTCTTACTACGTGATCCCGGAGGTGGCGCAGTTTAGCCATCTTCA
GGAACTGGACGGATTACCCCACTGGTGGTACGACTGCTGGGCACCTACAT
CCGGAATATCAGCATCCCGGCCCTACGTGCTTAACGATGAACGGGTGATA
CTTATCCTAGTTGCCACCGCTGCCGCCCAAAAAGGGTCAGCCCCGCCTAC
TACAGCTATATACCGGAACCAGCGCTGCAAATACTCGACATGTTCCCCAC
TCCATGCTCTGCGAAATGAACCCGGTTTCGATGACGAACTATTGACTATA
TCCGGACGCAGGCGTCTCTTGCCG
UFO10725.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4984-RB | 3112 | CG4984-RB | 1594..2556 | 9..973 | 4325 | 97.1 | Plus |
| CG4984-RA | 1969 | CG4984-RA | 451..1413 | 9..973 | 4325 | 97.1 | Plus |
| CG4975-RE | 3112 | CG4975-RE | 1594..2556 | 9..973 | 4325 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17731466..17732137 | 189..865 | 2970 | 97.6 | Plus |
| 2R | 25286936 | 2R | 17731204..17731385 | 9..190 | 880 | 98.9 | Plus |
| 2R | 25286936 | 2R | 17732213..17732274 | 885..944 | 195 | 95.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:58:13 has no hits.
UFO10725.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:43 Download gff for
UFO10725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4975-RB | 1582..2552 | 1..974 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:18 Download gff for
UFO10725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4975-RE | 1586..2556 | 1..974 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:55 Download gff for
UFO10725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4975-RE | 1586..2556 | 1..974 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:55 Download gff for
UFO10725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17732198..17732275 | 871..944 | 91 | -> | Plus |
| 2R | 17731196..17731384 | 1..189 | 96 | -> | Plus |
| 2R | 17731467..17732141 | 190..870 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:18 Download gff for
UFO10725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13618701..13618889 | 1..189 | 96 | -> | Plus |
| arm_2R | 13618972..13619646 | 190..870 | 97 | -> | Plus |
| arm_2R | 13619703..13619780 | 871..944 | 91 | -> | Plus |
