UFO10729.5prime Sequence
1151 bp (1015 high quality bases) assembled on 2012-01-17
> UFO10729.5prime
CAGTCGACATGCACCAGGAGCACATGGACCTGCATGAGCCCGTGGACTTG
AACAAGTCCCTGGACGAAATGACGCCGGAGGAGCGAATGCGAGCGCAGCA
TCAACTGATGGTGGAGAAACATCGCGGCCACGATGCCATGCACTCCGAGA
TGGTGATCATTCTGTTCGTCACCCTGGTTATTGCCCAGATCATCCTGGTC
GAGTGGAAGAAGCGGCACTACAGATCCTACGCTTTCGTCACCCTGCTGGC
CATGTGGCTCATTCCGCTGATCATCTCCTGCAGCTTCGGCTGGCTGCGCT
TCATAATCATCTGGCTGGTGTTCACCTGCATCACGGCACTGGTTATGCGA
CGGGCCATCAGCAAGCCCATCCAGGGCACAACGCCTAGGCTGGTCTACAA
GTGGTTCTACTTCATCTACAAGCTCAGCTATGGCCTTGGCCTGGTGGGCT
ATCTGGTGATCATAGCCGCCTTTCTGGGCATGAATTACATGTTCTCACAG
CCACCAAACACATGGATGGATGTGGGCCTGATGTTCTGCTTCTACGGCCT
GTACATCGGCGTCCTGGGGCGTGATATATCCGAGATATGTTCGGATAAGA
TGGCGGCAGCTATTGGCTACTACACACCTCAGGGTATTCCAACACGACAT
CTTGATCAGAATGTCTGCGCAGTGTGTGGCAATCAGTTGCTGGTCTCGGA
GAAGGAAGAGGGCGTCATTGAGAACACCTACAAGTTGTCTTGTAACCACG
TATTCCACGAGTTCTGTATACGTGGTTGGTGCATTGTGGGCAAGAAGCAG
ACGTGTCCCTACTGCAAGGAAAAGGTCGATCTCCAGAAGATGTTCCGCAA
TCCCTGGGAGAAGCCGCACGTTTTGTACGGTCGCCTGCTGGATTGGATTC
GTTGGCTGGTGCCCTGCCAGCCGCTCATCTTTTTCATAGTACAAGGCATC
AACTGGATGCTGGGACTGGAGCAAGCTTTCTAGACCATCGGTTTGGCCCG
CCGGGCCCAGGTAGTGGTATATCATATCATATCATATTCATATCCAACTA
GCCTAGGAGATCCTGTAATGACTTATGCTTGATCTCACCATTAAAAACGC
CCGGCGCCAACGACGTTCTGAAACAATCCGAATGAATCGAGTCATACTGA
A
UFO10729.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15814-RC | 1740 | CG15814-RC | 244..1206 | 9..971 | 4785 | 99.8 | Plus |
| CG15814-RA | 1884 | CG15814-RA | 388..1350 | 9..971 | 4785 | 99.8 | Plus |
| CG15814-RB | 1664 | CG15814-RB | 168..1130 | 9..971 | 4785 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17849413..17849711 | 389..91 | 1495 | 100 | Minus |
| X | 23542271 | X | 17848819..17849054 | 853..618 | 1180 | 100 | Minus |
| X | 23542271 | X | 17849117..17849347 | 617..387 | 1155 | 100 | Minus |
| X | 23542271 | X | 17848644..17848761 | 971..854 | 560 | 98.3 | Minus |
| X | 23542271 | X | 17849908..17849955 | 56..9 | 240 | 100 | Minus |
| X | 23542271 | X | 17849776..17849812 | 91..55 | 185 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osvaldo | 1543 | Osvaldo OSV 1543bp | 263..299 | 283..247 | 113 | 78.4 | Minus |
UFO10729.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:57:53 Download gff for
UFO10729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15814-RC | 172..1141 | 1..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:21 Download gff for
UFO10729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15814-RB | 161..1130 | 1..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:59 Download gff for
UFO10729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15814-RB | 161..1130 | 1..971 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:59 Download gff for
UFO10729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17848644..17848761 | 854..971 | 98 | <- | Minus |
| X | 17848819..17849054 | 618..853 | 100 | <- | Minus |
| X | 17849117..17849345 | 389..617 | 100 | <- | Minus |
| X | 17849414..17849710 | 92..388 | 100 | <- | Minus |
| X | 17849776..17849810 | 57..91 | 100 | <- | Minus |
| X | 17849908..17849962 | 1..56 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:21 Download gff for
UFO10729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17743809..17743843 | 57..91 | 100 | <- | Minus |
| arm_X | 17743941..17743995 | 1..56 | 92 | | Minus |
| arm_X | 17743150..17743378 | 389..617 | 100 | <- | Minus |
| arm_X | 17742677..17742794 | 854..971 | 98 | <- | Minus |
| arm_X | 17742852..17743087 | 618..853 | 100 | <- | Minus |
| arm_X | 17743447..17743743 | 92..388 | 100 | <- | Minus |
