UFO10730.5prime Sequence
1158 bp (1044 high quality bases) assembled on 2012-01-17
> UFO10730.5prime
CAGTCGACATGGCGGATAAAGTAAATGTGTGCATTGTGGGCTCCGGCAAC
TGGGGTTCGGCCATAGCGAAAATCGTGGGCGCCAATGCCGCCGCTCTGCC
GGAGTTCGAGGAGCGTGTGACGATGTTCGTCTACGAGGAGCTCATCGATG
GCAAGAAGCTGACGGAGATTATCAACGAGACGCACGAGAACGTCAAGTAC
CTGAAAGGACACAAGCTGCCCCCGAATGTGGTTGCCGTGCCCGACCTGGT
TGAGGCCGCCAAGAACGCTGACATCCTGATCTTCGTGGTGCCCCACCAGT
TCATTCCCAACTTCTGCAAACAGCTACTGGGCAAGATTAAGCCAAATGCC
ATCGCTATCTCCCTGATCAAGGGCTTCGACAAGGCCGAGGGCGGCGGCAT
CGATCTGATCTCGCATATAATCACGCGTCACCTGAAGATCCCATGCGCCG
TGTTGATGGGCGCAAACCTGGCCAACGAGGTGGCTGAGGGCAACTTCTGC
GAAACGACAATCGGCTGCACGGACAAGAAGTATGGCAAGGTGCTGCGCGA
TCTCTTCCAGGCGAACCACTTCCGCGTGGTGGTCGTGGACGATGCTGATG
CCGTGGAGGTTTGCGGTGCCCTCAAGAACATCGTGGCCTGCGGCGCTGGC
TTTGTTGATGGCCTCAAGCTGGGCGACAACACCAAGGCGGCTGTCATCCG
GCTGGGCCTCATGGAGATGATTCGCTTCGTGGACGTCTTCTATCCCGGAA
GCAAGCTGTCCACCTTCTTCGAGAGCTGCGGCGTGGCCGATCTGATCACG
ACGTGTTACGGTGGCCGTAACCGCCGCGTCTCTGAGGCGTTTGTGACTTC
TGGAAAAACCATTGAGGAGCTGGAGAAGGAAATGCTCAACGGCCAGAAGC
TGCAGGGCCCACCCCACTGCCGAGGAGGTCAACTACATGCTGAAGAACAG
GGTCTGGAGACAATTCCCCTGTCACGGCTATCACAAATATGCACAATCAG
CTCAGCCTATGATTATTGATGCATACGGCATCACCTGAGCATATGATAAC
GTTCATCATGCGTCGCAACTTGCAGCTTCTAGACATCGTTGGCGCGCGGG
CCCAGGCTAGGCCAATCCTAATCAATCCTAATCTATATCCAAACTAGTCT
AGAGAATC
UFO10730.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gpdh-RF | 2503 | CG9042-RF | 468..1539 | 9..1066 | 4885 | 98 | Plus |
| Gpdh-RB | 1651 | CG9042-RB | 146..1217 | 9..1066 | 4885 | 98 | Plus |
| Gpdh-RG | 2078 | CG9042-RG | 468..1517 | 9..1045 | 4860 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5946314..5946690 | 436..812 | 1885 | 100 | Plus |
| 2L | 23513712 | 2L | 5946043..5946250 | 230..437 | 1040 | 100 | Plus |
| 2L | 23513712 | 2L | 5944267..5944447 | 52..232 | 905 | 100 | Plus |
| 2L | 23513712 | 2L | 5947017..5947166 | 810..959 | 655 | 98.7 | Plus |
| 2L | 23513712 | 2L | 5944110..5944154 | 9..53 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:48:57 has no hits.
UFO10730.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:57:54 Download gff for
UFO10730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gpdh-RA | 429..1488 | 9..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:25 Download gff for
UFO10730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gpdh-RB | 146..1217 | 9..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:04 Download gff for
UFO10730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gpdh-RB | 146..1217 | 9..1066 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:04 Download gff for
UFO10730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5946316..5946688 | 438..810 | 100 | -> | Plus |
| 2L | 5947018..5947171 | 811..963 | 98 | -> | Plus |
| 2L | 5946044..5946250 | 231..437 | 100 | -> | Plus |
| 2L | 5944110..5944153 | 9..52 | 100 | -> | Plus |
| 2L | 5944268..5944445 | 53..230 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:25 Download gff for
UFO10730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5944110..5944153 | 9..52 | 100 | -> | Plus |
| arm_2L | 5944268..5944445 | 53..230 | 100 | -> | Plus |
| arm_2L | 5946044..5946250 | 231..437 | 100 | -> | Plus |
| arm_2L | 5946316..5946688 | 438..810 | 100 | -> | Plus |
| arm_2L | 5947018..5947171 | 811..963 | 98 | -> | Plus |
