UFO10731.5prime Sequence
1116 bp (1021 high quality bases) assembled on 2012-01-17
> UFO10731.5prime
CAGTCGACATGTGTGCACGCAAGCGGACGGAGGGCAATCTTTGCCGTCGC
CATAAAAGTGGCTGCAGTGCAAACCAATATAAACTGTGTGAACCGGATGA
GGAGTGCATCCGACTTAAGGATTGCCGACCCATATATTACAATGTGAGGA
GAAACAGATTGTCGGGGTCCGCAAAAGTGAATATATCGCAGACAAGAATG
TGTGGCGTGAGTGTTCGAGACCGGAAACGTTACAAAAGGATTTATATCTG
CTGTCCCAAGCCGGCAAACACCTTGCCAAGCTATCCGGATTGTGGGAAGC
CACAAACGACTAACCGTGTTATAGGCGGCACGGAGCCGAATCTCAACGAA
TATCCGTGGCTGGCCATGCTTCTATATCGAAATCGTAGTGCCTTCAACCC
GGATCGGGAGCTAGTCCCCAGTTGTGGTGGCTCCCTGATTAACACTCGCT
ATGTCCTGACCGCAGCCCACTGTGTAACCGATACGGTCTTGCAAATCCAA
CGCGTCCGCCTGGGCGAGCACACAACGTCCCATAACCCGGACTGCATCAG
CCGGGGCGCACGAATCGTTTGCGCTCCCACACATCTGGACATCGACGTGG
AGTCGATCACATCGCATAATGACTACGATCCAGCCAATTACACCTTTCGG
AACGACATCGCCCTGGTGCGACTCAAAGAGCCAGTGCGATATACGATGGC
TTACTATCCGATTTGCGTTCTGGACTACCCAAGGTCACTGATGAAATTCA
AGATGTACGTGGCTGGATGGGGAAAAACGGGCATGTTCGACACTGGGAGC
AAGGTGCTGAACACGCTGCCGTCAAGGTAAGGAAACCAGAAGAGTGCTCG
GAAAAGTACGCACACCGGCATTTCGGGCCCAGATTCCAGATATGCGCCGG
CGGCTTGATACCGGGGCACCTGCGACGGCGACTCCGGCAGTCATTGATGG
GCACATCGGGTCGCAGCTACGAGACATCACGTTCCTGACAGCATCACTTC
ATACGGAGTCTTGCGCACGATTGCTGCGACGTTTTCACACGACGGCGAGT
TTTACATGATACGGCCACCTAGCCGGCAGCCTTTCTAGACATCGCGCGCC
GGGTCAGTATGCTAAT
UFO10731.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31220-RB | 1421 | CG31220-RB | 276..1338 | 9..1056 | 4905 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19649448..19650057 | 79..688 | 3050 | 100 | Plus |
| 3R | 32079331 | 3R | 19650120..19650446 | 688..1008 | 1310 | 96.9 | Plus |
| 3R | 32079331 | 3R | 19648841..19648910 | 9..78 | 350 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:49:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 1360 | 3409 | 1360 1360 3409bp | 3309..3374 | 19..81 | 187 | 80.3 | Plus |
UFO10731.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:57:55 Download gff for
UFO10731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31220-RB | 213..1286 | 9..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:28 Download gff for
UFO10731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31220-RB | 213..1286 | 9..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:07 Download gff for
UFO10731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31220-RB | 276..1349 | 9..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:07 Download gff for
UFO10731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19648841..19648910 | 9..78 | 100 | -> | Plus |
| 3R | 19649448..19650057 | 79..688 | 100 | -> | Plus |
| 3R | 19650121..19650464 | 689..1023 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:28 Download gff for
UFO10731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15474563..15474632 | 9..78 | 100 | -> | Plus |
| arm_3R | 15475170..15475779 | 79..688 | 100 | -> | Plus |
| arm_3R | 15475843..15476186 | 689..1023 | 96 | -> | Plus |
