UFO10732.5prime Sequence
1118 bp (1040 high quality bases) assembled on 2012-01-17
> UFO10732.5prime
CAGTCGACATGGCCGACAAAGCTGCAGCGCCCTCTGTGGACTGTGCGGCG
CCATCTGTGGACTGTGCGACGCCTGCAATACCAGCCGTGGAGGATCACAC
CACGCTGACCGTTCCACCTGCTTCAGCGAACAAAGCCACGGACGCTTCCA
CTTCCACTGCCGTCCAAGTGGCCGTCGATGGGGGGGAGCCGGAACGCTGC
TGCTGGATCTGCTTCGCCACCGATGAGGACAACCGTCTGGCGGCGTGGGT
GAAGCCCTGTCAGTGCCGCGGCACCACCAAGTGGGTGCACCAGAGCTGCC
TCTACCGCTGGATCGATGAAAAAACCCAGAAGGGTAACGCTCTACGCACT
GTATCGTGTCCGCAGTGCCAAACGGAGTACATCATAGTGTTCCCGCAGAT
GGGCAAGCTTGGAGGTGCTTTAGAGGCAATAGATAACCTCATCAAGCGCC
TGAGCCCCTTCCTGGCGGCTGGTTTCTTCGTGGGCTCCCTCTACTGGACA
GCAGTAACTTACGGAGCAGTCACATTTTTACAGATTGTCGGACATGAGCA
CGGCATGTCCATAATGGAGTCTGGAGATCCGCTCGTTCTCCTTATTGGGT
TGCCGGCTATTCCAGTGGGGCTTGTGCTTGGTCGATTGATTCGCTGGGAG
GATGCATTGTTGCGTCTTATTCGAAACCGCGGGACGGTGGTGCGGAAGTT
TCCTTTTGTAAGCCTTATTTATCCGAACCTCAGCCAGGAAGAGGAACAGC
AAAGCATCAGCAATCCGGCCACACCGGCTCTCTCTGACCCTGTCTCAGCC
ACGAGGGTCTTCTGCGGCGCTCTCTTGCTGCCCACCATATCGTCGATCGT
GGGGACGTATTCTCTTTGACACGGTTGATAACACATTGCATCGTACTCTG
CTTGGAGGTCTGACCTTTATACGGTCAAGGGAATTCTGAAATTATTTGAG
CAGAACAGGTACGGCGCGCAAGAAGCGCCGAATTGTGACTACACCTGAAG
GAAATAATTCGACTCATGCCACCGCAACAATACTTCGGCAGCAGCGGCGC
GGCAGCAATGCTGCCCGAGCAAAGCCCAGTGCCTCACGGACGAAGAACGC
TTTAATAAAGTCAGCGGG
UFO10732.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9855-RC | 1718 | CG9855-RC | 169..1254 | 5..1083 | 4915 | 97.6 | Plus |
| CG9855-RA | 1533 | CG9855-RA | 169..1254 | 5..1083 | 4915 | 97.6 | Plus |
| CG17991-RA | 1064 | CG17991-RA | 122..316 | 191..385 | 210 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4397112..4397640 | 533..5 | 2630 | 99.8 | Minus |
| 3R | 32079331 | 3R | 4396443..4396802 | 1083..731 | 1030 | 92 | Minus |
| 3R | 32079331 | 3R | 4396860..4397058 | 730..532 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 27241388..27241582 | 191..385 | 210 | 73.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:49:11 has no hits.
UFO10732.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:57:56 Download gff for
UFO10732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9855-RA | 177..1275 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:32 Download gff for
UFO10732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9855-RA | 165..1263 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:10 Download gff for
UFO10732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9855-RA | 165..1263 | 1..1090 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:10 Download gff for
UFO10732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4396860..4397056 | 534..730 | 100 | <- | Minus |
| 3R | 4396434..4396802 | 731..1090 | 92 | <- | Minus |
| 3R | 4397112..4397643 | 1..533 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:32 Download gff for
UFO10732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 222582..222778 | 534..730 | 100 | <- | Minus |
| arm_3R | 222156..222524 | 731..1090 | 92 | <- | Minus |
| arm_3R | 222834..223365 | 1..533 | 99 | | Minus |
