Clone UFO10738 Report

Search the DGRC for UFO10738

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:107
Well:38
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptVps36-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO10738.5prime Sequence

1127 bp (979 high quality bases) assembled on 2012-01-17

> UFO10738.5prime
CAGTCGACATGAATCGCTTCGCTTATGTGGAGGCCCGTCTGAGTCCCAAT
GAATCCTTCGTCAGCCGCGACAACAGGGTAAAAATATACGATGGCGACCA
AAAGACGGACTTTGAAGACGGCGAAGTGGTGCTCACCACACACCGACTGT
TTTGGGGTCGCCCTGGAGAGATTGCCCGGGCCGCCGTAACACTTTGCCTG
CCACTCAGCTATGTGATATCCGTCAGCGAAGAGACTACTGCCTCTAACTT
CTTTGGCCGCAAGACTCGCATAATCATGCATCTGCATCCTCCAACGTCGG
ACAAAGGACCCGGCCCACTGGACACCAGTCGCGCCACCCACATCAAACTG
TCGGGCAAGAATGGCCTGAGTGTCGAGTTCCACAGTGCCTTGCGGGAGAC
TCTAAATGCCCGCGTCTGGGAAATCCTCTTGACCAGCGAGATCATCATCA
ATGGCGTGGCCAGCAGTCCAACCTTGGAGCCTGCCAACGACAGGCTGGCC
CGCATTCAGAAGAGGACAGGAATTGGGGGCATCGAACGGCATTTGGAGGC
AAAAGCCAAGGCCACGGATGAGAACATAGCACTTGCCTTTCAGGATCTCA
GTGTTCTAATGGCCATGGCCAAGGACATGGTAGGAGTGTCCAAGACAATA
AGCAGCAAGATACGCAAACAGAAGGGAGAAATATCTGACGATGAAACGGT
GCGTTTCAAATCCTACCTCATGAGCCTGGGCATCGATGATCCCGTCACGC
GGGACAACTTTACCAGCAATTCTGCCTACTTCAGTAGCCTGGCCCGACAG
ATTTGCGAAATGCTGCTGGATCCTATCGAGGAGCAAGGTGGCATGATGTC
CTTGGCTGATGTCTACTGTCGTGTAATCGCGCTCGTGGTCTTGAACTGCT
ATCGCCTGAGGACTTGCTGCACGCCTGCGAGCAGCTTAGTTGGTCCATTA
CGCCTTGCCGCAGCTTTCCCAGGTGCGCCTAGAATGGCTACACTTGGAGT
CCACGATGATGCCCCTAATTGCCGTTGACCAATTGGAGAAGTGGAGGCTG
CCGATGTCTCGGGCTGTGGGAGACTGGCCAACCACTTGGAAATTTCACTT
CCTGCTGCCAGGAAGCTATTGGTCATG

UFO10738.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
Vps36-RA 1346 CG10711-RA 89..1198 9..1121 4965 97 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13512139..13512867 831..103 3645 100 Minus
3L 28110227 3L 13511816..13512083 1099..829 590 89.5 Minus
3L 28110227 3L 13512929..13513024 104..9 480 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:49:56 has no hits.

UFO10738.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:00 Download gff for UFO10738.5prime
Subject Subject Range Query Range Percent Splice Strand
Vps36-RA 76..1156 1..1084 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:59 Download gff for UFO10738.5prime
Subject Subject Range Query Range Percent Splice Strand
Vps36-RA 81..1161 1..1084 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:30 Download gff for UFO10738.5prime
Subject Subject Range Query Range Percent Splice Strand
Vps36-RA 81..1161 1..1084 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:30 Download gff for UFO10738.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13512140..13512865 105..830 100 <- Minus
3L 13512929..13513029 1..104 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:59 Download gff for UFO10738.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13505240..13505965 105..830 100 <- Minus
arm_3L 13506029..13506129 1..104 96   Minus