UFO10738.5prime Sequence
1127 bp (979 high quality bases) assembled on 2012-01-17
> UFO10738.5prime
CAGTCGACATGAATCGCTTCGCTTATGTGGAGGCCCGTCTGAGTCCCAAT
GAATCCTTCGTCAGCCGCGACAACAGGGTAAAAATATACGATGGCGACCA
AAAGACGGACTTTGAAGACGGCGAAGTGGTGCTCACCACACACCGACTGT
TTTGGGGTCGCCCTGGAGAGATTGCCCGGGCCGCCGTAACACTTTGCCTG
CCACTCAGCTATGTGATATCCGTCAGCGAAGAGACTACTGCCTCTAACTT
CTTTGGCCGCAAGACTCGCATAATCATGCATCTGCATCCTCCAACGTCGG
ACAAAGGACCCGGCCCACTGGACACCAGTCGCGCCACCCACATCAAACTG
TCGGGCAAGAATGGCCTGAGTGTCGAGTTCCACAGTGCCTTGCGGGAGAC
TCTAAATGCCCGCGTCTGGGAAATCCTCTTGACCAGCGAGATCATCATCA
ATGGCGTGGCCAGCAGTCCAACCTTGGAGCCTGCCAACGACAGGCTGGCC
CGCATTCAGAAGAGGACAGGAATTGGGGGCATCGAACGGCATTTGGAGGC
AAAAGCCAAGGCCACGGATGAGAACATAGCACTTGCCTTTCAGGATCTCA
GTGTTCTAATGGCCATGGCCAAGGACATGGTAGGAGTGTCCAAGACAATA
AGCAGCAAGATACGCAAACAGAAGGGAGAAATATCTGACGATGAAACGGT
GCGTTTCAAATCCTACCTCATGAGCCTGGGCATCGATGATCCCGTCACGC
GGGACAACTTTACCAGCAATTCTGCCTACTTCAGTAGCCTGGCCCGACAG
ATTTGCGAAATGCTGCTGGATCCTATCGAGGAGCAAGGTGGCATGATGTC
CTTGGCTGATGTCTACTGTCGTGTAATCGCGCTCGTGGTCTTGAACTGCT
ATCGCCTGAGGACTTGCTGCACGCCTGCGAGCAGCTTAGTTGGTCCATTA
CGCCTTGCCGCAGCTTTCCCAGGTGCGCCTAGAATGGCTACACTTGGAGT
CCACGATGATGCCCCTAATTGCCGTTGACCAATTGGAGAAGTGGAGGCTG
CCGATGTCTCGGGCTGTGGGAGACTGGCCAACCACTTGGAAATTTCACTT
CCTGCTGCCAGGAAGCTATTGGTCATG
UFO10738.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps36-RA | 1346 | CG10711-RA | 89..1198 | 9..1121 | 4965 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13512139..13512867 | 831..103 | 3645 | 100 | Minus |
3L | 28110227 | 3L | 13511816..13512083 | 1099..829 | 590 | 89.5 | Minus |
3L | 28110227 | 3L | 13512929..13513024 | 104..9 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:49:56 has no hits.
UFO10738.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:00 Download gff for
UFO10738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps36-RA | 76..1156 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:59 Download gff for
UFO10738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps36-RA | 81..1161 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:30 Download gff for
UFO10738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps36-RA | 81..1161 | 1..1084 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:30 Download gff for
UFO10738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13512140..13512865 | 105..830 | 100 | <- | Minus |
3L | 13512929..13513029 | 1..104 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:59 Download gff for
UFO10738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13505240..13505965 | 105..830 | 100 | <- | Minus |
arm_3L | 13506029..13506129 | 1..104 | 96 | | Minus |