UFO10739.5prime Sequence
1108 bp (990 high quality bases) assembled on 2012-01-17
> UFO10739.5prime
CAGTCGACATGTTGGACTTTGTGGTGATATTCACCAAGGGCGGAGTGGTG
CTGTGGCACTCGAACGCGTCCGGTAACAGTTTCGCCTCCTGCATCAACAG
CCTGATACGTGGCGTCATTCTGGAGGAGCGCAACACAGAGGCCAAGTACT
ACGAGGAGGACCACCTGGCCGTGCAGTTTAAGCTGGACAACGAACTGGAC
CTGGTCTATGCGGCCATTTTCCAGAAGGTGATCAAACTGAACTACCTAGA
TGGATTCCTGGCCGACATGCAGGCGGCCTTCAAGGAAAAGTACGGCGACA
TACGTCTGGGCGATGACTACGACTTCGATCGCGAATATCGACGCGTGCTC
AGCGCCGCGGAGGAGGCGTCCGCCAAGCAAGTGAAAGCACCTAAAACCAT
GCGCTCCTACAACGAGTCACAGAAATCGAAAAAGACCGTCGCCTCGATGA
TACAGGACGACAAGAAGCCGGTGGAGAAGCGGGTGAACATCCAGGAGGCC
CCGCCACCATCCAAATCACAGCCGTCGTCGCCACCGACGGGCTCCCCAAT
GGACAAGATCATCATGGAGAAACGGCGCAAGCTGCGCGAAAAGCTCACGC
CCACCAAGAAGACCTCGCCCAGTGATTCCAAGTCCAGCAAGCCCGAGAAG
GCCGGCAAGAAGCCACGCGTCTGGGATCTGGGCGGTAATTCCAAGGATGC
CGCTCTGCTCGATCGCTCCAGGGATTCGCCCGATGATGTGCAGTACCAGA
ACATCAACAGCGAGCTGGTGGGCACAATGCAGGGCGTCATCCGCGACTTG
GATGTGGAGAGCGAGGACGAGGCTGACAACGAGGATGCATCCTCTGAGGG
GAGCCGAGGAGCATGTGCAGTCAAAGAAGGCAAGCGCGGTGGCCTGCTAT
CCTACTTCAGGGCATTGTAGGCGCCAAGACCATGTCGCTGGCGATTTGCA
GCTGGCGCTGGAAAGATGCCCGACATTCTGATATCGAAGAACGTGCTCTG
AAATAGCAGCTAGCTGGGCGACTCGTGCGCTAGTTTGATGCCAAGCAATT
GGCACATTCGACGCATCCGCAGGCAGGTGAGGAGGCCTCAGGATCGCTGG
GTGAGATA
UFO10739.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gtp-bp-RA | 2056 | CG2522-RA | 114..1224 | 9..1100 | 4905 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11128151..11128795 | 764..120 | 3210 | 99.8 | Minus |
| X | 23542271 | X | 11127794..11128065 | 1025..763 | 860 | 93.8 | Minus |
| X | 23542271 | X | 11128857..11128974 | 126..9 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:50:04 has no hits.
UFO10739.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:00 Download gff for
UFO10739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gtp-bp-RA | 130..1223 | 9..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:03 Download gff for
UFO10739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gtp-bp-RA | 114..1207 | 9..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:34 Download gff for
UFO10739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gtp-bp-RA | 114..1207 | 9..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:34 Download gff for
UFO10739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11127726..11128063 | 765..1086 | 91 | <- | Minus |
| X | 11128151..11128789 | 126..764 | 100 | <- | Minus |
| X | 11128858..11128974 | 9..125 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:03 Download gff for
UFO10739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11021759..11022096 | 765..1086 | 91 | <- | Minus |
| arm_X | 11022184..11022822 | 126..764 | 100 | <- | Minus |
| arm_X | 11022891..11023007 | 9..125 | 100 | | Minus |
