UFO10742.5prime Sequence
870 bp (870 high quality bases) assembled on 2012-01-17
> UFO10742.5prime
CAGTCGACATGCGTTCCGAAATATCTTGCTCCATGGTGCACGATCTGCTG
GAGTCACAAAAATGCAAATTTGTGCAAACGACACCTGATTGTCTAATCAA
TATGAATTTGTTCAACTACCTGGGATGGCATTATTGCAAGGTGGATGTCC
GAAATAGTTTCAATTCCTTCTGGAGTGTGTTGGGCATGTTTCTGATTACC
ATTTATGTCTTCTGGATGATGCAAATAACAATAAAAAACTACTTCTGTCC
AACTTTGATGGTAATCGCAGACTTATTGCGAATGAACGAGAGCACGGCTG
GAGTTACAGTTCTGGCCATTGCAAATGGATCACCGGATTTCTTCACGGCG
ATTGCCTCGAGAGTGCAGACCTCCAAGCACTCATTCCTCTCGTGCATGTC
GCAGGCCATGTTTCTGCACATCTTTGTGGCCGGACTGGTGATCCTGACCA
AGCCCTTCAATATGCGGGCAAACACTTACCTGAGGGATTTCGGTTTCCTG
TTCCTCAATACGGTCTACATGGATTACATCCACAAGCGACCCAAGGGAAT
CAGCTGGCTAGCTGCGTTGCCCAGTGCCTTCATATTCGTTGGCTATGTGG
TGGTGGCCATCGTTGATCAGCATTTGCTGATTGCCCGCATTCAGAAAATG
GAGCAAAGACAACTGAATGTGGCTGAGGCGTTGCAGCTGGAGGACTGAAC
CCGCAAAGAGATGCCACTGAAGCGGCAGAATCGATCGACCCTCCATTGAC
CGGAAGTCGAATAAGCGAATATTCCGGCAATTTTGGAATACCGTTGCCGA
ATTCACAGGATCGATTTCATCGGGAACCTTCCTGGTGAAGCTGTATCTGA
TAGCGAAGCACCCCTTCGAT
UFO10742.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13223-RA | 1769 | CG13223-RA | 71..943 | 9..870 | 4030 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11256871..11257274 | 242..645 | 2020 | 100 | Plus |
| 2R | 25286936 | 2R | 11256577..11256809 | 9..241 | 1165 | 100 | Plus |
| 2R | 25286936 | 2R | 11257325..11257560 | 646..870 | 620 | 91.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:50:28 has no hits.
UFO10742.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:02 Download gff for
UFO10742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13223-RA | 71..943 | 9..870 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:13 Download gff for
UFO10742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13223-RA | 71..943 | 9..870 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:47 Download gff for
UFO10742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13223-RA | 71..943 | 9..870 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:47 Download gff for
UFO10742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11256577..11256809 | 9..241 | 100 | -> | Plus |
| 2R | 11256871..11257274 | 242..645 | 100 | -> | Plus |
| 2R | 11257325..11257560 | 646..870 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:13 Download gff for
UFO10742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7144082..7144314 | 9..241 | 100 | -> | Plus |
| arm_2R | 7144376..7144779 | 242..645 | 100 | -> | Plus |
| arm_2R | 7144830..7145065 | 646..870 | 93 | | Plus |
