UFO10743.5prime Sequence
1144 bp (1033 high quality bases) assembled on 2012-01-17
> UFO10743.5prime
CAGTCGACATGTTTTCGATCAGAGTGTGGTTCATCTGCCTGGTGATAGTT
ACCCTCAACTCCTTTCCCGCCTACTCCTGGGATTATTGCCAAGAGCACTG
GTGTCCGCGTTCCACCGACCACGTAGCGTGCAACAACAACGGGACGTTTG
GCCTCGATTGCGGAAGGGAGGCCAGGCTAATCCCGCTCAGCAATCAGTTG
CAGGCGTTCATTGTGCACCAGGTAAACTTCTATCGCAACCAGGTGGCTTC
GGGCGGACTCTCCGCCTTCGGACCCGCCCGCCGAATGGCTAGTGTCCGCT
GGGATCCCGAGCTGGCACAGCTGGCTGAGCTGGCGGCAAAGAGGTGCAGT
TTGTCCGGCGATGGATGCCGCAACACCAGGCGATTCAAGCACGTGGGCCA
GCTGACGGGCCACGTAATCTTCAGTGCGGGAAAGCACAGCGACTTGGAGC
TGCTGCGCCACAAGATCTCGAATTGGTTTGGCCAGTACATGAGAGCCAGC
AAGGATCTGCAAGCCGCCGATCCATCAAGCAACATCAGCAGCTTCCGGCA
GTTGATACAGGAAAGCTCCACCCACATGGGATGCGGCGTGCTCCGCCAGA
GGAGCCACATGCTGTGGCACCAGCAGTTCATCGTCTGTAACTTTGCCCGT
AGGAATATGCCCCGCGAGCAGGTCTACCAGGTGGGCGTGGCTGCCACAGG
ATGCAGGTCGGGAAGGAATCCTCGCTATCCCAATCTCTGCGCTCTGCAGG
AAGATACGATGTGAACGCCGTCGACCGTTTTCACTCAAGCGGCCACTTAG
GATAAGGTTCAAGTACAGCGCATCCCATCCATCGAAAGTTTTGGGTGCTG
ATCGTGATGTAGCCTTCCATCCCAATATCAAGTTGGGACGTCTTGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATATTCATATCATATCACACTAGCCTAGGAGATCTGTCATGACTA
GTGCTTGATCTCACAATAAAAAACGCCGGCGGCACGAGCGTCTGAACAAA
TCCGAATGGAGTCTGAGTCATACTGATCTATCACAGGAATCAAGCGAGCT
CGATATCAATTACGCCGCTGCACTCATCGATACTGTTGAATCAT
UFO10743.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3640-RA | 994 | CG3640-RA | 9..896 | 9..894 | 4390 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24639905..24640658 | 143..894 | 3670 | 99.7 | Plus |
| 2R | 25286936 | 2R | 24639696..24639830 | 9..143 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:50:36 has no hits.
UFO10743.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:03 Download gff for
UFO10743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3640-RA | 1..899 | 2..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:16 Download gff for
UFO10743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3640-RA | 1..899 | 2..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:48 Download gff for
UFO10743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3640-RA | 1..899 | 2..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:48 Download gff for
UFO10743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24639687..24639830 | 1..143 | 98 | -> | Plus |
| 2R | 24639906..24640661 | 144..898 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:16 Download gff for
UFO10743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20527210..20527353 | 1..143 | 98 | -> | Plus |
| arm_2R | 20527429..20528184 | 144..898 | 99 | == | Plus |
