UFO10746.5prime Sequence
1125 bp (1019 high quality bases) assembled on 2012-01-17
> UFO10746.5prime
CAGTCGACATGAAAGTGGTCGGCAGTTTGCATATCCTCTATTCGCTGGCG
ATCTTAGTATCCCTACATTCTCTCGTCGCGGGAAACTCTTCGGTGGTGGC
GGTGACCCACGAAAACTTGCAAGGAATAATCGATTCTAATGAGTTGGTTC
TGCTTAGTTTTTACACGGATTGGTGCCGTTTTAGCCAGATTTTGCAGCCC
ATTTTTGAGGAGGCGGCGGCGAAGGTTATACAGAAATTCCCTGAAAACGG
CCGTGTGATCCTGGGAAAAGTAAACTGCGACACTGAAGATATATTGGCCG
ATCAGTTTGACATACTTAAGTACCCAACGATAAAGATCGTCAGGAATGGA
TTGATTGGCAATCAGGAATACCGTGGCCAGAGATCGGTGGAGGCCCTTTT
CCAGTTCGTGGAAAAGGAGCTATCAGATCCAATCAAAGAGTTCCATAACA
TTGATGACCTTAAAAACGTGGATGTTGGGTATGGAATAGTCATTGGTTAT
TTCATTTCCAAGGATCATGCTGAGTATGATAACTATCGCAGGGTAGCGAG
CCTTTTGCGCAACGATTGTAGGTTCCTTGTGGGCTTTGGTGACTTGACTA
AGGACCTCCGACCGCCAGGAAAGAACGCGTTGATCTTCCGAGGCGATCCA
TCGATTCCGAATCACAAAAACCAGTACAGTGAGTACTTGGGCAACATGAC
CAGCTTTAAAGAACTAACCTTTTGGATCGATAAGACGTGTGTGCCCCTGG
TGCGAGAGGTCACCTTCGATAATGCAGAGGAACTATCGGAGGAAGGATTA
CCATTTGTATTGCTATTTTACAACAAGGACGATCTAAGTCCCATCCAGGA
GTTCAAGACGCAATTCAAGCCAGATGGAAAATGAGACGAGGGTTATTTTC
CTGACTGCCGAAGGAGAAGTCTTTAAGCCACCCACTTTTCATTTGGGAAA
GTCCCCGAGTTGATTTGCCAGTGATCGCAATCGATTCTTCATGCACATGT
ACCTATTTCCACGCTCAGGACATTACGATCAGTGCCTCAAAGTCATGATG
ACTGTTCAGCGTGCACTGCCATTAATTACATGTGCCCAACAGGCTAGAGA
TCGAAGTCATATCGATCCACCTGTA
UFO10746.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10029-RB | 1665 | CG10029-RB | 39..1143 | 9..1096 | 4970 | 97.7 | Plus |
| CG10029-RA | 1380 | CG10029-RA | 39..1143 | 9..1096 | 4970 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7316605..7317169 | 573..9 | 2810 | 99.8 | Minus |
| 3R | 32079331 | 3R | 7316057..7316504 | 1015..570 | 1955 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:49:26 has no hits.
UFO10746.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:57:57 Download gff for
UFO10746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10029-RA | 30..1073 | 1..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:42 Download gff for
UFO10746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10029-RA | 30..1073 | 1..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:16 Download gff for
UFO10746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10029-RA | 30..1073 | 1..1036 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:16 Download gff for
UFO10746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7316023..7316502 | 572..1042 | 97 | <- | Minus |
| 3R | 7316607..7317177 | 1..571 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:42 Download gff for
UFO10746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3141745..3142224 | 572..1042 | 97 | <- | Minus |
| arm_3R | 3142329..3142899 | 1..571 | 99 | | Minus |
