UFO10748.5prime Sequence
1059 bp (1026 high quality bases) assembled on 2012-01-17
> UFO10748.5prime
CAGTCGACATGGCCGGGAGAAGGGTGATTGGTCTCTGTTTTGGAATATTC
TTACAAGTGCTGCTAGCGACTGCTGGACAGGATCGGATGAGCATGCTCTG
TTCCGACGACGACACACCAGCCTGTGCCCAGAGCCGCGAAAATGGAATGT
ACTTTTTGTTCGCCAACGAGTGTGACCTTCGGAAGGCCCAGCGTGGCAAC
CTCATGAATGGCCCTCTATATGACGTTACGCTTCGATTCTGCTTTCCCAG
CTGCGAATTCGAGTGCAGCTCAAGATATCAGCCAGTTTGTGGCATCAGCT
CGAAGTCGGGGGAACGAAAGACCTTCAGGAGTCGCTGCGAAATGCTGCGA
ACCGCTTGCATCTCAAGGTCGGAGTGGATGGTCCATCGATGGGGAGTGTG
TCCAAAAGCCAACGCGGTGCCACAGATCAGTGAAAAGCCGCCTGTGCCCG
TGCCCTGCACCAGGATCTATCGACCTGTTTGCGCCATGTACGCTGGTGTC
AAGTCAACCTTCTCCAACGAGTGTTTGGTGAACGCGGAAAACATCAAGTC
CCAGAGAAACTGGCGCATCGTTTCCGAGGGCCTTTGTGGCGAGGACAGCA
CCAAGATGAAGCATAGTCGCAAGCAGAAGCCGAAGGCCAAGCCCAAGTCG
GATGCGGAGCGCACCAAGCGGAGCCACAGAGGCAAGAGGCTGTCCACTCA
GGCGGAAGACTTCCAGATACCGGAGGACGCCGTGAGATTTACGCTCCCTC
GACCTTTCACACGCAGTTCATCAGCCAATCGGGCGCCATGGAGAAGAGCT
ACTCTCTGCCCGCCAGGAAGCCCTATGTGGTGGTCCCGCCTAAATCGAAG
CGGCGAATCCCCACAAAGTCTTGTGTTTTCGGCAATGAGCCTGTTTGCGG
GAACTTAGAGGGCAGAGTCGCACCTTTTCCAACGTTTGTGAACTCATGAG
TTTAGCCAAAAGTCCGAAATGCATGACATTGCCTCACATGAGCCTGTTCG
CCGCTGCGATAAGAACTTGTCCTACGGTTTTTCAACCTATTTTTGTGCCC
ACCAGAAAA
UFO10748.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1077-RA | 2302 | CG1077-RA | 34..1087 | 7..1058 | 4930 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6168368..6168773 | 559..961 | 1880 | 99.3 | Plus |
| 3R | 32079331 | 3R | 6167884..6168222 | 220..558 | 1695 | 100 | Plus |
| 3R | 32079331 | 3R | 6167516..6167732 | 7..223 | 1070 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:49:41 has no hits.
UFO10748.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:57:59 Download gff for
UFO10748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1077-RA | 1..1049 | 9..1055 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:51 Download gff for
UFO10748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1077-RA | 29..1084 | 1..1055 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:23 Download gff for
UFO10748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1077-RA | 29..1084 | 1..1055 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:23 Download gff for
UFO10748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6167511..6167728 | 1..219 | 98 | -> | Plus |
| 3R | 6167884..6168222 | 220..558 | 100 | -> | Plus |
| 3R | 6168368..6168784 | 559..971 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:51 Download gff for
UFO10748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1993233..1993450 | 1..219 | 98 | -> | Plus |
| arm_3R | 1993606..1993944 | 220..558 | 100 | -> | Plus |
| arm_3R | 1994090..1994506 | 559..971 | 98 | -> | Plus |
