UFO10751.5prime Sequence
1027 bp (1014 high quality bases) assembled on 2012-01-17
> UFO10751.5prime
CAGTCGACATGGCTGAGAATGAACCGCTGAACGACCTGCAGAGCCAGGTG
AATGGTCGTATCCTGCCCGCCGCCAATGGACATACAGCATCCGCGACCAA
CGGATTGGTGCATGCGAATGGCAAGGATGCAATGAAGCCGTCAGCTCCCG
TTCAGAATGGGAATGGCAACGCGAACGGGACACACATCGAGGCGCCCTGC
TGTCGGGACATACACGGCAAGGAGCCACCGGACGGAGGAGCACGCGCCTG
GCTGGTCATGGTGAGCGCCTTCCTTTGCAACGGCATCATCTTTGGGTTCA
TCAACACCTACGGCGTTATCCATTCGCTGCTGACGGATAGGCTTACGAAG
CTCGGCGATCCGGAGGCGTCCAGCAAAGCGGCTCTGATTGGCGCCCTGGC
CATCGGCACCACATTCCTCTTCTCCACAATGGCTGGCTGTCTGACGGACA
AGATTGGCCTGCGGCTGACCACGTTCGCCGGCGGAGTCCTCTCCGCGGGA
GGACTGCTGCTGTCCTCGTTTTGCACGGAGAACATCGGCGCCCTGTACTT
CACCTACGGGATCATGTTCGGCCTGGGTGCCGCCCTTGCCTACACGCCCA
CATTGGCCATCCTGGGCCACTATTTCAAGCGGTACCTGGGAAAGGTGAGT
GGCTTTGTGACCGCCGGCTCCAGCGTTTTCACTGTGATACTGCCGCCCTG
TCTGGACAAGCTGCTCGGTAGCTATGGTCTGGAGGGGACCCTGCGGATAA
TGAGCCTCGTTTCCGCCTTTATTATCCTTTGCTCCTTCGTGTACAAGCCA
CTGCATCCGCCACCGGAGCCGCCGAAGAAGAGCCCGGCAGATCGCGCATC
AATCTCTTCCTACGCTCGATCATCAACGTGAGATCTGGAAGCGTAAACGC
TTCGTCATCTGGGCACTTTTGTGTGCCGCTCGCCCTGTTCGGCTACCTTT
GTGCCCTATGTGCACATTGATGCAGATCGTGAAAAACAACTTTTCCGGGA
GAGGATGTCAACCTGCCGGTCTTGTGT
UFO10751.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kar-RB | 2321 | CG12286-RB | 192..1209 | 8..1027 | 4900 | 99 | Plus |
| kar-RA | 2176 | CG12286-RA | 192..1209 | 8..1027 | 4900 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12687716..12688089 | 381..8 | 1870 | 100 | Minus |
| 3R | 32079331 | 3R | 12684154..12684523 | 750..381 | 1835 | 99.7 | Minus |
| 3R | 32079331 | 3R | 12683820..12684099 | 1027..746 | 1060 | 96.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:51:30 has no hits.
UFO10751.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:08 Download gff for
UFO10751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kar-RB | 185..1209 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:45 Download gff for
UFO10751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kar-RA | 185..1209 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:12 Download gff for
UFO10751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kar-RA | 185..1209 | 1..1027 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:12 Download gff for
UFO10751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12683820..12684098 | 747..1027 | 96 | <- | Minus |
| 3R | 12684158..12684522 | 382..746 | 100 | <- | Minus |
| 3R | 12687716..12688093 | 1..381 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:45 Download gff for
UFO10751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8509542..8509820 | 747..1027 | 96 | <- | Minus |
| arm_3R | 8509880..8510244 | 382..746 | 100 | <- | Minus |
| arm_3R | 8513438..8513815 | 1..381 | 99 | | Minus |
