UFO10755.5prime Sequence
1114 bp (1017 high quality bases) assembled on 2012-01-17
> UFO10755.5prime
CAGTCGACATGTCCAAACACAATACACGACTCGATAGGCATGTTAAGTTT
AGGATTCTTCAGGAGGACAGGTTACAATCACCGAGACAAAAAGAGGATAA
TATCAAACGGAAAAAGAGCACTTCCAAATCTGAAAATCTTACTGAACGTG
GCCTATCATCTTGTCTGATCAACAGCTCGGTAGATCTGCGGATCACAGGA
GGTGAGAATGACCCAGCACAGCGCAATGTTGGAAAATTGCCTCGCACCGA
CAGCGAGTGTCAGTTCAAAGCTCCGGGATACCGATTTCTTACCGAACAAG
ATACTACAGTGAACACCCATGAGGTCAAGATGAGCCCCAGGGTAGTGACG
AAAAAGGATTTAAGGCACAAATGTGATTTCTTTGCTAAGAACAAGGACGC
ACGACCGTTTAAGAATAAGATCACGCAGACGCTTTACAGAGAATCCTCTG
CGCAGACAATGGCTTATTTGCCGGAGATTTTTGAAGCAAACAGCGTTGAA
ACCTTGGAACTGTTTTCCCTGCCATCTATATTCCCAGTAGCAAATCGACC
GGGACTCCATGAAGTTGAGATTCTGGAACGCGCCAGGAAACGATGGGCCT
TTAGTGATGCCCTAAAGATTCACTTCAAAAACCTACTTCAAGACGCCAGG
AAAGTGGCGATAAAAACAGAGCTCAAGGAGATTTTGGAGGCCATTGAATG
GGAGCAGTGGATACAGCGTGAGGAGGACATTCAAGAGTGCCAGATGATGC
GTCTCCAGATCGTGATTAAAATGTTTGATAAGCGGGAGAAGGAGATGCAC
ACCGCTTCAAAGACTCGAATCGAAACAGCCTGCGAGCGAATCGAGAAGCG
ACGTCAGCGGGTTTGCGAAAAACGAGATCGAGTTCCAACGGGGAATGCGC
CGAATGAGTTCCAACTACGAGAATCGCGAAGGTGGGAGAGCAAAGTCCAT
GTACGCGTGGGATCACCCAGCTCGGAGTCTACGCTCGCTTTAAGATACGG
CGTGATCGGCGCGTCGCACTTTGTGTCAAACAGCACAAAAAGCTTCGATT
GAGATCGATGACTAAGACGATCACAATACGACTCATGTCGGTTAGAAGCC
TAGATGATCCAGCA
UFO10755.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15143-RA | 3513 | CG15143-RA | 29..1107 | 9..1067 | 4890 | 98.1 | Plus |
| CG15144-RB | 3362 | CG15144-RB | 856..1209 | 548..899 | 430 | 75.5 | Plus |
| CG15145-RA | 2787 | CG15145-RA | 718..926 | 696..902 | 305 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17523325..17523947 | 1043..438 | 2310 | 96.6 | Minus |
| 2L | 23513712 | 2L | 17524007..17524246 | 439..200 | 1200 | 100 | Minus |
| 2L | 23513712 | 2L | 17524327..17524521 | 203..9 | 975 | 100 | Minus |
| 2L | 23513712 | 2L | 17527814..17528091 | 825..548 | 415 | 76.6 | Minus |
| 2L | 23513712 | 2L | 17531226..17531380 | 850..696 | 295 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:51:38 has no hits.
UFO10755.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:09 Download gff for
UFO10755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15143-RA | 25..1109 | 1..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:49 Download gff for
UFO10755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15143-RA | 25..1109 | 1..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:14 Download gff for
UFO10755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15143-RA | 25..1109 | 1..1070 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:14 Download gff for
UFO10755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17523296..17523945 | 440..1070 | 96 | <- | Minus |
| 2L | 17524007..17524244 | 202..439 | 100 | <- | Minus |
| 2L | 17524329..17524525 | 1..201 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:49 Download gff for
UFO10755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17523296..17523945 | 440..1070 | 96 | <- | Minus |
| arm_2L | 17524007..17524244 | 202..439 | 100 | <- | Minus |
| arm_2L | 17524329..17524525 | 1..201 | 98 | | Minus |
