UFO10758.5prime Sequence
1149 bp (1042 high quality bases) assembled on 2012-01-17
> UFO10758.5prime
CAGTCGACATGGCGGATGAAAAGGCCAAGGAATCCTTCCGCGAGCGGCAA
GCGCAGGAGTTGGAGGTTATAAAGTCCATCTTTGGCTGTGATGTGGAGGA
CCTAAGACCCCAGGCGAATCCTTCCCTGTGGAAGCCAACGGACATACGGA
TACAACTTACCCCACTTCGAGACTCCTCGAACGGACTGGAAACCTATGTG
TGCACCAAGCTGCACGTCACCTGTCCATCAAAGTATCCAAAATTGCCCCC
TAAGATATCTCTGGAGGAGTCCAAAGGCATGTCGGATCAGCTGCTGGAGG
CCCTACGCAACCAATTGCAGGCTCAATCCCAAGAGCTACGTGGCGAAGTG
ATGATTTATGAATTGGCCCAGACCGTTCAGGCCTTTCTCCTCGAACACAA
CAAACCACCAAAGGGATCATTCTACGACCAGATGCTCCAGGATAAACAGA
AGCGCGACCAGGAGCTACAGGACATACAGCGGCAGCGGGAGTCCCTGCAA
CGCCAGACGCTCATCGACGAGGTGGAGCGGCGCAAAGAGATGTTCAAAAC
GGAGGCTAAGAGGCGCGGCGAACCAAGGCGCAGCATGAGTGAGTCTAACC
CACGGCATCCTAGCTCGTCGGAGAGCTCCGAGAACTCCTCGCCCTACTAT
CGTGGTCACATCTACCCCTCCAAATGCCTGGATCACCGCAACACGGAGAC
GCTCTACTTCCACAAGATGGGCAGGCAGATTCAGCGTGGATGCTGCGTTG
GTCACTCCCAACGAGGTTGCATCGCCTACACTGGCATAGATATGCACTGC
GGCCAGTTGCTCTACATAACAGAATGGAAACATCAAGTACAGCCAACTGG
AGCAGCCATGCATCGGCGGAGCAAGTGCCACTGGAGCAGCGAGTCAAAGT
GCATGGGCAGTCATCGTGTGACGAAGTGATGGCCTCCATTGAAAAGCAGT
GTCCTCACTGTCCCAACTACAGCACAAAACCTCGTCTCGTACGAGTGCGT
ACTGTGCATCAGCGAAAGAAGTTTACTTGGTGTATTTGGTCCAAGACTTC
TCATGGCACCAGCGTGTTTCAGCATCTCCCTCCTCGCTGCTGGTGCATGA
ACGACCCCGAATGGTGCCCGCGGCGGCTTGGAACGCCCTATGATATATT
UFO10758.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gcn2-RB | 5284 | CG1609-RB | 332..1457 | 9..1125 | 5130 | 97.9 | Plus |
| Gcn2-RA | 5737 | CG1609-RA | 332..1457 | 9..1125 | 5130 | 97.9 | Plus |
| Gcn2-RC | 5290 | CG1609-RC | 332..1463 | 9..1125 | 5060 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31396402..31396909 | 245..752 | 2525 | 99.8 | Plus |
| 3R | 32079331 | 3R | 31396985..31397320 | 750..1079 | 1105 | 95.3 | Plus |
| 3R | 32079331 | 3R | 31396121..31396293 | 73..245 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 31395991..31396056 | 9..74 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:50:59 has no hits.
UFO10758.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:05 Download gff for
UFO10758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gcn2-RA | 329..1435 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:29 Download gff for
UFO10758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gcn2-RA | 327..1433 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:58 Download gff for
UFO10758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gcn2-RA | 327..1433 | 1..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:58 Download gff for
UFO10758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31395986..31396056 | 1..74 | 94 | -> | Plus |
| 3R | 31396123..31396292 | 75..244 | 100 | -> | Plus |
| 3R | 31396402..31396907 | 245..750 | 99 | -> | Plus |
| 3R | 31396986..31397345 | 751..1103 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:29 Download gff for
UFO10758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27221708..27221778 | 1..74 | 94 | -> | Plus |
| arm_3R | 27221845..27222014 | 75..244 | 100 | -> | Plus |
| arm_3R | 27222124..27222629 | 245..750 | 99 | -> | Plus |
| arm_3R | 27222708..27223067 | 751..1103 | 95 | | Plus |
