UFO10759.5prime Sequence
1107 bp (1016 high quality bases) assembled on 2012-01-17
> UFO10759.5prime
CAGTCGACATGGCAAAGAAGGGGGGACAACAACAACTGCAGGCTGACATC
CAAACGGACGAGGAGCTGGAGCGTTTCATGGAGCGACCAGGACTCTTGGT
TTTGGATGTTTACTCGGAATGGTGTGGTCCTTGCCAGGGTATGGTCGGAT
CCTTGCGTAAAATCAAACTGGATGTTGGTGGCGATAATCTGCATCTGGCC
ATTTGCAAATCGGATACGATCACGGCCTTGAAACGATTCAATAAGAGAAG
TGAGCCCATCTGGCTTTTTGTGACGGGCGGCAGGGCCGTAAATCTTCTGT
TCGGTTCGGATGTGCCTAAGCTGGTGAGTCTGCTGGTCAAAGAGCTAGAG
AAGACCATGCAAAAATCATCGCGTCCAGGCACCTACAGACTTGACGAACT
GCAGCCCATCGAGGTGGAGCAGCAGCGCATCAAAATGGAGGCCATCGAGC
GGGCCGAGCGGGCGGAGCGCGAGATAAAGCACAAGAAGCAGATAGACTAC
CTTAACCATGTAACGGACTCCATTATGGAGAATATGCCCGATATTGGAGT
GACTGTCTTTGGACCGCAAGTCAATCGTGATATGTTCAAGAAGCTAACCG
AACCAGCCGAAGCGCTCAAAATGCAGTGCAAGGATCGCCGGGTCATCCAG
GTGAGCACCGATCAGTTCGAGATTGTGAACTTTGCATGCAAGAATCCCAT
GCCGCCGGATGTGATCGAACAACTGGACGGCAAGGAGCTGCTCATGTGCT
TCTGGAAGATTGACGAAAGCATCGGCACAGTGCCCAACGTTCTAATGGCC
TATGCCCACGAGCTAACCAAGGAGCGAGTGGCACCACCCAACGATGATAT
ACCCGAGGAGCATGTTATACCGCCGCTAATCACAACTATGAAACTAAAAG
TCGAGGTGAGCTGATGAGGGCGAGACTTGGGGTGGAGGAGATAAGCTCCG
AAGAGGAGCGAGGCTGCATCAGCCAAAAGGCAGGCCAAACCAATCCATTA
GCTCCGAGGAGCGCATCTTGGCGAAGAGGAGCAGCGATCTGGATGCGAGG
AGGGAGCCAGCGAAAGGGAGGAAAACGGTATGGCAGAAACCGGGCGCGGC
GAATGCC
UFO10759.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18130-RA | 2344 | CG18130-RA | 103..1193 | 9..1093 | 4905 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11991469..11992230 | 1030..275 | 3315 | 97.8 | Minus |
| X | 23542271 | X | 11992414..11992518 | 203..99 | 525 | 100 | Minus |
| X | 23542271 | X | 11992576..11992666 | 99..9 | 455 | 100 | Minus |
| X | 23542271 | X | 11992282..11992354 | 276..204 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:51:06 has no hits.
UFO10759.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:06 Download gff for
UFO10759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18130-RA | 95..1168 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:33 Download gff for
UFO10759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18130-RA | 95..1168 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:02 Download gff for
UFO10759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18130-RA | 95..1168 | 1..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:02 Download gff for
UFO10759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11991428..11992229 | 276..1067 | 97 | <- | Minus |
| X | 11992283..11992354 | 204..275 | 100 | <- | Minus |
| X | 11992414..11992517 | 100..203 | 100 | <- | Minus |
| X | 11992576..11992673 | 1..99 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:33 Download gff for
UFO10759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11885461..11886262 | 276..1067 | 97 | <- | Minus |
| arm_X | 11886316..11886387 | 204..275 | 100 | <- | Minus |
| arm_X | 11886447..11886550 | 100..203 | 100 | <- | Minus |
| arm_X | 11886609..11886706 | 1..99 | 95 | | Minus |
