UFO10762.5prime Sequence
1116 bp (978 high quality bases) assembled on 2012-01-17
> UFO10762.5prime
CAGTCGACATGGAGCTATCGCTGTCACCAAAAGAAACGGAGATCCGTCCC
AACACCATTCCGGACTTAAAGGTGGATGCCACATTTCGGAAGGTGGCTAA
ACATGCGATTACCTTTGCGATTTGGAAGATAGACGAGGATCGCCTGGAGG
CGGTACAAAGATCACATTATGGCACCTTCTACGATAGCTGCGCCTACATT
ATCTATGCAGCAAGTTTGTCGGGGCATTATGCCAATCACGAAACCATCAC
ACGCGAACAGAAGCCGAATGTGAGTCTTGAGCGATATATCCACTACTGGC
TGGGCAAGAATGTTAGCGAGCAGAATCGATCCAATGTTGTTCATAAAATC
CAGGAGCTGGACTCGTATCTGGGAAACATATCCTCTATTTACCGAGAGAC
CCAGAATCTGGAGAGTGCGAGATTCCTTTCGTATTTCAAGAAGGGTTACG
ATGTTCGATCGGGAGCACTAATAAGCGCGCCCCAGAGGCCACGACTTTTT
CAATTGTACGCCCGCAAATGGTTGCGATCCATTGAGGTGGCCACCATCGA
TTGGTCGCACTTTAACTCGGATTACGTAATGGTCCTGCAAACGGATAATC
TTACCTACGTCTGGATAGGGCGCTCCAGTTCAGGAATTGAACGACGAAGT
GCCCTCGACTGGGTCCAAAAGCACTGCAGTGGATCGCCAATCACTATAGT
CGATGATGGATATGAGCAGGCCATGTCCCAGAGCACAAGGAGCTGTGGAA
CACCATGCTTCCGCTAAAGAAACGCATGTTCTGTCAGCCAGTCAGTTGGT
CAGCGAATACGCCGACTACAATAGCAATAAGTTCCGCATCTATAAGTGCA
ATCAACGGGGAAGCTGCACCTGGATCATTGGATGTGGGCATGCCAGCAAA
GATGATCTAGCGATGCCCATGGAGTCTATTTACTGACAACTACGCCAGAG
TATTTGGTTGTGGTAGAGCAGCACCGCAGCCAGATGCCCTTCTGCCATGG
AAATGGAAGAGCTTTTGTAAAAGAAGAATATCGATATTACGTTGGTGGTG
CGTGTCCCTCAGGTCCGAACCCGTGGAGTTAAAGCGTCTCTTTGCACTGT
TAAGTTGCGAACACCA
UFO10762.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:52:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qua-RB | 3306 | CG6433-RB | 483..1593 | 7..1095 | 4900 | 97.3 | Plus |
| qua-RC | 3318 | CG6433-RC | 483..1605 | 7..1095 | 4770 | 96.3 | Plus |
| qua-RA | 3266 | CG6433-RA | 474..1553 | 38..1095 | 4745 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:52:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17488704..17489369 | 1095..452 | 2230 | 94.6 | Minus |
| 2L | 23513712 | 2L | 17489693..17489903 | 248..38 | 1055 | 100 | Minus |
| 2L | 23513712 | 2L | 17489431..17489633 | 451..249 | 1015 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:52:17 has no hits.
UFO10762.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:12 Download gff for
UFO10762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qua-RB | 471..1598 | 1..1103 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:04:11 Download gff for
UFO10762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qua-RB | 477..1604 | 1..1103 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:28 Download gff for
UFO10762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qua-RB | 477..1604 | 1..1103 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:28 Download gff for
UFO10762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17488693..17489369 | 452..1103 | 95 | <- | Minus |
| 2L | 17489431..17489633 | 249..451 | 100 | <- | Minus |
| 2L | 17489693..17489902 | 39..248 | 100 | <- | Minus |
| 2L | 17491802..17491836 | 1..38 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:04:11 Download gff for
UFO10762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17488693..17489369 | 452..1103 | 95 | <- | Minus |
| arm_2L | 17489431..17489633 | 249..451 | 100 | <- | Minus |
| arm_2L | 17489693..17489902 | 39..248 | 100 | <- | Minus |
| arm_2L | 17491802..17491836 | 1..38 | 92 | | Minus |
