UFO10770.5prime Sequence
1106 bp (977 high quality bases) assembled on 2012-01-17
> UFO10770.5prime
CAGTCGACATGTTGGGAGTCGAGAAGCCATATGTGGTAGAGCCAGCTATG
GCCGTAGCGCAGGACTCGTTTGAATTTGGCAGCAACGGCGATGGGAGCTC
CACCAACAGCCACACAAGCAACGCCAGCTCCAAGGACCTTGGCAGACTGA
CTAGTGGCGACGGAGCCCAGAACTTCGCCCAAGACAGCAGTGCCAACAGC
ATTGACCAGGACAGCACGGACAACACAAACAGCGACTGCAATCCAATCAC
ACTGAACGATCTACTCGGCTTGTGCGGTGCCAGCACTGCCAATGAAGTGG
TCGGTACTGGCCAGACCCCCTCGACATCAGCGCCGATACTTGGAGCAGGA
GGAGGCGGAAGAGCAAATGGAGTTACAGCCGGCGCAGCAACGGCAACAGG
AGTGGGAGTTGGAGCTGGAGGGACATTACCTGGGCCAGGAGTTCCATCGA
TCCAGGGAGGTGGTGGAGGAGGAGTCGTGGGACAACAAACCAATGCCTCG
TGCAACACCTCAGCGGCTAACCCATCAGCCAGCTTCGGTGGCAACGGCAG
CAGCAGCGACGTCAATAATCTGCTGCTCGCCAGTGCTGCTGCCGCTGCCG
CCGCGGCTGCCGGTGATGGCGCTCAACTGTCCGCCAATGCGGCAGCCTAC
GCTCCGCTGACGCCCAGCTCCACTCATTCATCGGCCTCGCCGGGCACAAA
GTCCAATTTTGACTACTTCCAGTTTGAAAATGTTGCACAAAGTAACCCAC
TTAAGGCTTTCCAAAGAACAAACATCAGCTTCGATTGCTCTCCCCCTTAT
CGCCAAGTACGCCTACATCTATTTACAATCGCTCCTTTCACAGTTCACCT
TTAGTCAGCGACAGCAGCAACTCGTTCAGCGGCATTGGACTCTTCCATGG
ACTCATCAACATGTTTCTACACAGCAACAACAACAGCCACAGGCGGGAGC
AGCCAGGTTAACCAGGTTTGGGCACCTCATGGGCACGAATGGGACTTAGT
TTGCAAACGCTCCCGCGCTCGAACTCGCCGAAAATCCGAAATGCACAATT
CACGACTGAACAAATCTACTGAACATGCATTAATTTGCCTGTCCGTAAAA
TGGAAA
UFO10770.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| orb-RD | 3258 | CG10868-RD | 302..1403 | 7..1099 | 4800 | 96.8 | Plus |
| orb-RB | 4251 | CG10868-RB | 302..1403 | 7..1099 | 4800 | 96.8 | Plus |
| orb-RF | 3079 | CG10868-RF | 321..1238 | 191..1099 | 3895 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23269122..23269603 | 722..241 | 2410 | 100 | Minus |
| 3R | 32079331 | 3R | 23269751..23269984 | 240..7 | 1155 | 99.6 | Minus |
| 3R | 32079331 | 3R | 23268384..23268522 | 858..721 | 630 | 98.6 | Minus |
| 3R | 32079331 | 3R | 23268118..23268297 | 1029..856 | 240 | 86.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:51:46 has no hits.
UFO10770.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:09 Download gff for
UFO10770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb-RD | 294..1406 | 1..1103 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:53 Download gff for
UFO10770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb-RB | 294..1406 | 1..1103 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:16 Download gff for
UFO10770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb-RB | 294..1406 | 1..1103 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:16 Download gff for
UFO10770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23268384..23268520 | 723..858 | 98 | <- | Minus |
| 3R | 23269122..23269603 | 241..722 | 100 | <- | Minus |
| 3R | 23269751..23269987 | 1..240 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:53 Download gff for
UFO10770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19094106..19094242 | 723..858 | 98 | <- | Minus |
| arm_3R | 19094844..19095325 | 241..722 | 100 | <- | Minus |
| arm_3R | 19095473..19095709 | 1..240 | 98 | | Minus |
