UFO10776.5prime Sequence
1110 bp (1026 high quality bases) assembled on 2012-01-17
> UFO10776.5prime
CAGTCGACATGTCGTCATCGCAGGCTGTCCGCTCCTCGAAATACTCCTAC
CGTGCCACGTCCACCGGACCCGGTACCGCCGATGTGAACATCGAGTACAT
CCAGGACCTGAGCTCGCTCTCCCGCTTGGAGGACAAGATCCGTTTGCTCC
AAGATGATCTTGAAGTTGAACGTGAGTTGCGCCAAAGGATCGAGCGCGAG
AAAGCCGATCTCAGCGTTCAGGTCATTCAGATGTCCGAGCGTCTCGAGGA
GGCCGAGGGTGGTGCTGAACATCAATTTGAAGCCAACCGCAAGCGCGACG
CTGAGCTGCTGAAGCTGCGCAAGCTGCTTGAGGATGTTCATCTTGAGTCG
GAGGAGACCACTTTGCTTTTGAAGAAAAAGCACAACGAAATTATCACGGA
TTTCCAGGAACAGGTTGAAATCCTAACGAAAAACAAGGCCAGAGCCGAAA
AGGACAAGGCCAAATTCCAGACCGAAGTCTACGAGCTGCTCTCCCAGATC
GAGTCCTACAACAAGGAGAAGATCGTGTCGGAGAAGCACATCTCCAAACT
GGAGGTCTCGATCTCCGAGCTCAACGTGAAGATCGAGGAGCTTAACCGCA
CCGTTATCGACATTAGCTCCCACCGATCCCGCCTCTCGCAGGAGAACATT
GAGCTGACCAAGGACGTCCAAGATCTGAAGGTTCAGCTGGACACGGTCTC
GTTCTCCAAGAGCCAGGTCATTTCCCAGCTGGAGGACGCCCGCCGTCGCT
TGGAGGACGAGGACCGTCGTCGCTCGCTGCTCGAATCCTCTCTGCATCAG
GTTGAGATCGAATTGGACTCGGTTCGTAATCAACTCGAGGAGGAGTCCGA
GGCCCGCATCGACTTGGAACGTCAGTTGGTCAAGGCCAATGCCGATGCCA
CCTCCTGCAGACAAGTGACTCCGAGTGCTGCCCGCGCCGAGGAGTCGAGA
GATCCGTCGCAGTACCAGTCGCATCACGAGCTGAGAGCACATCGAGTCCT
CATCGTCAAGTCACATCTGAGAGATGAGACCGCGCCTGCCAGCGATGAGG
TGCTCATCATCGATTCTGAAGTCGAACACACGCTGCCCGGAGCTGACAGT
TCGTCAACCC
UFO10776.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prm-RA | 3661 | CG5939-RA | 224..1340 | 7..1097 | 4810 | 97 | Plus |
| Prm-RB | 3226 | CG5939-RB | 224..1340 | 7..1097 | 4810 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8739987..8740454 | 907..440 | 2340 | 100 | Minus |
| 3L | 28110227 | 3L | 8742106..8742272 | 442..276 | 835 | 100 | Minus |
| 3L | 28110227 | 3L | 8744962..8745087 | 132..7 | 630 | 100 | Minus |
| 3L | 28110227 | 3L | 8742337..8742424 | 275..188 | 440 | 100 | Minus |
| 3L | 28110227 | 3L | 8744275..8744338 | 188..125 | 305 | 98.4 | Minus |
Blast to na_te.dros performed 2014-11-27 20:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 2707..2759 | 644..696 | 112 | 67.9 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 4159..4211 | 644..696 | 112 | 67.9 | Plus |
UFO10776.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:18 Download gff for
UFO10776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prm-RA | 254..1360 | 1..1081 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:04:44 Download gff for
UFO10776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prm-RB | 217..1323 | 1..1081 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:55 Download gff for
UFO10776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prm-RB | 217..1323 | 1..1081 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:55 Download gff for
UFO10776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8739788..8740451 | 443..1081 | 95 | <- | Minus |
| 3L | 8742106..8742272 | 276..442 | 100 | <- | Minus |
| 3L | 8742337..8742423 | 189..275 | 100 | <- | Minus |
| 3L | 8744275..8744331 | 132..188 | 100 | <- | Minus |
| 3L | 8744963..8745090 | 1..131 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:04:44 Download gff for
UFO10776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8732888..8733551 | 443..1081 | 95 | <- | Minus |
| arm_3L | 8735206..8735372 | 276..442 | 100 | <- | Minus |
| arm_3L | 8735437..8735523 | 189..275 | 100 | <- | Minus |
| arm_3L | 8737375..8737431 | 132..188 | 100 | <- | Minus |
| arm_3L | 8738063..8738190 | 1..131 | 96 | | Minus |
