UFO10777.5prime Sequence
1148 bp (1029 high quality bases) assembled on 2012-01-17
> UFO10777.5prime
CAGTCGACATGACCGAGGGCAAGAACTTACCCCACTCTAGTGCGGATGTG
CCGTTCCGCAGCAAGGAGCTGCGCAAGCAATCGCTCATCCAGCACACCGG
CCTGGTCGGAGTCATCGATGAGGGCACCAAGACCATCGGTTTCTCCATCT
ACACCACGCCGGACTTCAAGGAGATCGCCGCACACCGGGTGGAGCTGAGC
GTGATCACGCCCCAGGATGGCTGGTATGAGCAGGATCCGCTGGAGATGAT
GGCCTCGATCAACAAGTGCGCCGAGGAGGCCATCAAGCAGCTACCCGAAC
AGGGTTTCTCTGCCAGCGACATTGTCACCGTGGGCATAACCAACCAGCGC
GAGACGACAATCGTCTGGGATGCGGTCACCGGCAAACCGCTGTACAATGC
GCTCCTGTGGAAGGACATCCGCACTAGCACTACAGTGGAGCAGATCGTGG
CCAAGGTGCAGGATCCGAACCACTTCCGCAGCAGCACTGGCCTGCCCATC
TCCACGTACTTCTCGGCCCTCAAGATCCGCTGGCTGCGGGACAATGTGCC
CGAGGTGCGACAGGCCATCCGGGAAAGGCGATGCAAGGCGGGCACAGTCG
ACAGCTGGATCGTCTGGAACTTGACAAACGGAGCTCTCCACATCACGGAT
GTAACGAATGCCTCCCGCACTCTGCTCATGAATCTGGAGACGCAAGCCTG
GGATCCTGTTCTGCTCAAGACGTTCGGTATCAGAGAGGAGATGCTGCCCA
CCATCCACAGCTGTTCGGAGATATTTGGCAAGATCACTTCGGAGCGAAGT
CCACTGCGTGGGATGACCCTAAGTGGAATAATGGGCAACCAGCAGGCCTC
GCTTCTGGGCCAGATGTGCGTGAAGCCGGGTCAAACGAAGAACACTACCG
ATCCGGCTGTTTCTGCTCTGCAATACGGGGGACAGCCGGTCTTTTCAGGC
ACGGTCTGCTCACCACCGTGCTTACAACTCGTCCCAGCACGACGATTTAC
GCATTGAGGGAGCTGTGTCGTGCGAACTGCGCTGTCTGGCTGCAACCAGG
TGCGTATCTGCGACTCAAAAATGCCGAGAAATATGCGGAAATGGTGCCCC
ATCGGGATGTACCTTCGTCGCTAAGAACAATTGCTCCTACTGGGCGGC
UFO10777.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gk-RD | 2260 | CG7995-RD | 119..1241 | 7..1106 | 4995 | 97.5 | Plus |
| Gk-RF | 2483 | CG7995-RF | 343..1464 | 8..1106 | 4990 | 97.5 | Plus |
| Gk-RA | 2318 | CG7995-RA | 178..1299 | 8..1106 | 4990 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1743212..1743835 | 8..631 | 3120 | 100 | Plus |
| 3L | 28110227 | 3L | 1743903..1744247 | 630..970 | 1525 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:53:26 has no hits.
UFO10777.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:18 Download gff for
UFO10777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7995-RD | 113..1247 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:04:48 Download gff for
UFO10777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gk-RD | 113..1247 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:58 Download gff for
UFO10777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gk-RD | 113..1247 | 1..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:58 Download gff for
UFO10777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1743205..1743834 | 1..630 | 99 | -> | Plus |
| 3L | 1743904..1744408 | 631..1110 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:04:48 Download gff for
UFO10777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1743205..1743834 | 1..630 | 99 | -> | Plus |
| arm_3L | 1743904..1744408 | 631..1110 | 94 | | Plus |
