UFO10778.5prime Sequence
1134 bp (1048 high quality bases) assembled on 2012-01-17
> UFO10778.5prime
CAGTCGACATGTTCCGATTTGGCAAGCTCCATCGCAGTCTGTCTAAGGTG
GCCAAAAAGGGACAGACAGCTGTGTATTCCCAGCGCCGTTGCATTCAGGC
GAGGAGTTTCTTGCCGGGATTGGCTAGTAGGACGGCTGGAACGCCCTCTG
CGACGGCCCAGGTAACCGGTGGAAACAAGCAGCACGTACACCCCCATGGT
AATTCCGTTAACAGTGGCCACGAAGAACATAACACCCGCTGGCCGAGGAA
AGTCTTTAGTGGCATCCAGCCGACGGGTTCCCTGCATCTGGGTAATTATC
TCGGCGCCGTGCGCAAATGGGTGCAGCTGCAGAATGCTCGTGACGATGTC
ACCGTGTGTATTGTGGATTTGCACTCTATTACCATGCCCCACAATCCGCC
GCTTCTGCGAGAGAACATCTTCACCATGGCCGCCACGTTGTTGGCATGTG
GCATCGATCCCACCAAGAGCACCCTCTTTGTCCAGTCCGCCGTTGCCGAG
CACGCCGAGTTCAATTGGATCCTTAGCTCCTTGACCACCATGCCGCGATT
GGCTCAACTGCCGCAGTTCCGAGAGAAGTCCCGTCTTCTAAAGGATGTCC
CTCTGGGATTGTACGTTTACCCGGTTCTCCAAGCAGCCGACATTATGCTT
TACAAGTCCACTCATGTTCCTGTGGGCGCTGACCAGATTCAGCACATTCA
GCTGGCCCAGCACTTGGCCAGAATTTATAACGGTCGCTATGGCGAGACTT
TCCCTGTTTGCACCGCCATCATTGAGGATGGTGATGCCTCCCGTGTGCTG
TCCCTGCGAGATCCCTCCAAAAAGATGTCTAAATCGGAAGCGAATCCCAA
GGGCCACCATCAACTTGTGTGACTCGCCCGACTTGATTACGCAGAAGATA
AGAAAGCCGTCACAGACTTTACATCGGACATTACTTATAATCCTGGCAAG
CGTGCTGGCGTCAGCAATCTGGTCAACATCCATGCCAAGGTCACGGGAAA
GAGCATTAGACAGTGGTGAACGAGGCCGCCACTTTGGGACACGGCCAAAG
TTATATGACGTGTTGGCGGAGGCCTGTGTTCGAGCACTTGCGTTCGATCG
AGAAAACGAATCCACCATCCATGACTACGCATCG
UFO10778.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7441-RB | 2213 | CG7441-RB | 154..1270 | 9..1127 | 5170 | 98.1 | Plus |
| CG7441-RA | 2477 | CG7441-RA | 154..1270 | 9..1127 | 5170 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17850161..17850590 | 228..657 | 2150 | 100 | Plus |
| 3L | 28110227 | 3L | 17850777..17851218 | 656..1099 | 1750 | 96 | Plus |
| 3L | 28110227 | 3L | 17849880..17850098 | 9..227 | 1095 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:53:36 has no hits.
UFO10778.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:19 Download gff for
UFO10778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7441-RA | 179..1284 | 1..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:04:52 Download gff for
UFO10778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7441-RA | 147..1252 | 1..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:01 Download gff for
UFO10778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7441-RA | 147..1252 | 1..1109 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:01 Download gff for
UFO10778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17849873..17850098 | 1..227 | 98 | -> | Plus |
| 3L | 17850161..17850588 | 228..655 | 100 | -> | Plus |
| 3L | 17850777..17851228 | 656..1109 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:04:52 Download gff for
UFO10778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17842973..17843198 | 1..227 | 98 | -> | Plus |
| arm_3L | 17843261..17843688 | 228..655 | 100 | -> | Plus |
| arm_3L | 17843877..17844328 | 656..1109 | 96 | | Plus |
