UFO10779.5prime Sequence
1147 bp (1018 high quality bases) assembled on 2012-01-17
> UFO10779.5prime
CAGTCGACATGACGAAAGTTACTGAGGGAGAAATTTCACATGGCGTTCAA
GATGTCGGGAAATATTATCTGGATTTTCACCTTCTAGCCAAAGGATTCGT
CCGCCAGGACTCGGTACACGACTTTGTAAACAGCGATTCCGATGGAGACT
TTATAGCACTGAGCGGCTCCAAATCGGAAGTGATCACTCTGGAATTGAGC
AGCAAGTTCATGGTCGTGGATCCCTTTCCGTATTTTGTGGCCATTTATGA
TTCCAACGCTGCGGAAACACGACCTCTGGACGTTTTGGCCAACAAAGTGG
ATCTGGTTGCCATATACGACAGCTGCGATGTCCTGGAGGCACAGCACTTG
GCCCTGGACCCGGCATACACGGCTGTGTGCTCCGTTGCCGTGCCACCAGC
CAGACTAACAGCTGTTAAGCGAGCACCCAAGCTGGCAGCTAATGGAAATC
TCCTCCTGGGCTCCCTCAACACTTATGGATCCTTGAGCCTAATAAACAAG
TCCGCTGAGTACAATCGTTGGAACCCTGTGGAAGGACTAAATATCGCTGA
AACTCTGAGGGACACTCTGCTGCCTGAAGTGGACATCGCCAAGATAAAAG
ACTTTAAGAGCTATCAAGAATATATTAATCCCGCCTGGATCACTATGTTT
GCTTGGTTACCTGATGATGCAGATGCCACTGGCCAGCATGTTTTGGTTCT
GGGAACAGCCGCAGGAAGTTTGTGGTTGCTCACACTAAGCGCCGATGTCA
AAACTCTTTTAAGTCATCAAGAAACGAAAACCTCAATGGGTCGTATCTGC
CATATACAAGCTTTCAAGGACCTTCTACTGGTGGGCGATAGCAACGGACT
CATTCACCTGTACCAATTGCCAGCTAAGGAAATACAGCTCTCGCCTTAGT
GAAGCCCTTGTGGGAGAAAAGCCGATCGCATGGTCTGCAAATGGCAGTGA
TCACTGAATGTCCAGATGATTGCTATTATATACCTGCTGCAAGCCGCGCA
CCTGCTGACTTGAGCATGCAAGACCGGGGAGCACAGACTGCTTGCAAGCC
TCGATCTATGTCGCGATGAAGATCACGCTCCTCTGCAGCTGAAGAACGTA
GCTACGTGCAGGACGCTGAGCTGTTGTCTGCTACAATATCCAGAGAA
UFO10779.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12182-RC | 3493 | CG12182-RC | 257..1379 | 5..1113 | 5050 | 97.7 | Plus |
| CG12182-RA | 2368 | CG12182-RA | 257..1379 | 5..1113 | 5050 | 97.7 | Plus |
| CG12182-RB | 2508 | CG12182-RB | 455..1519 | 63..1113 | 4775 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2598063..2599070 | 1063..64 | 4465 | 98 | Minus |
| 3L | 28110227 | 3L | 2599265..2599323 | 63..5 | 280 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:53:45 has no hits.
UFO10779.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:20 Download gff for
UFO10779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12182-RA | 214..1323 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:04:57 Download gff for
UFO10779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12182-RA | 252..1361 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:03 Download gff for
UFO10779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12182-RA | 252..1361 | 1..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:03 Download gff for
UFO10779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2545378..2545394 | 1115..1132 | 94 | <- | Minus |
| 3L | 2598004..2599070 | 64..1114 | 97 | <- | Minus |
| 3L | 2599265..2599326 | 1..63 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:04:57 Download gff for
UFO10779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2545378..2545394 | 1115..1132 | 94 | <- | Minus |
| arm_3L | 2598004..2599070 | 64..1114 | 97 | <- | Minus |
| arm_3L | 2599265..2599326 | 1..63 | 95 | | Minus |
