UFO10780.5prime Sequence
1166 bp (1015 high quality bases) assembled on 2012-01-17
> UFO10780.5prime
CAGTCGACATGGCCAGTATTTCTAAGAGCCGCGCCAGCAGCTGCTCCTCC
AGAAAGAGGCTGCATCTGCAACCGGGATCGCTGCTCTGCGTGATCGTCTT
CTGCCTGCTGGCTTCGTGCTCGGCTCAGCCAATCGAGTCAACCTCATTGC
CTGCAGAAGTGGACGATGTGGAGGGTACCACAATACTTCCCATCCAGTTG
GAGGAGAGTTCACCAACACCAGAACCCATTATCAAGAATGAAACAGCTAC
TGCTCTTCCTGTCGTGGAACTCAAAGTAGCTGAATCTAATCCTGTAGATC
CTGTTGAGGCTACGGATAATTTTGTATCGGTTTACGGCGGAAATCTGGAG
CAGGATATAAAGAACGACGTGAACAGCGAAGTGGAAGATGCGCCCTCTCC
GGTGGAACCAATCATCGAGGAAGTTCAAAAAGTGGCAGAAGCTGAACTTG
AAAATCATGAAATTAAGCTTGCGGTCCAAAGTGCTCGGGAGCCCAAATCC
CTGGATGCTGAAGAGGAGTCAAAGACAATCGATGAAGATCGCTTGGAAAA
TCAAGATAAAGCGGAGACAGTAACGGATAACATTGCCGTTTCCAGTGAGC
AGATGGAGAGCCACATCAGACCATTACCCAACGTGACCAGTGACCTGGTT
TCCGTGATTCTCAACGAAGACAAAGCCATCACTGAGCAACCGATCACCAA
AACGAACCTTCTGGCTTTGGAGCAGGAGCACGAGAAATTCGAGGAAATTG
ATGAAAGTACTACAGTGCCAGTTTATGAGGAGCCCAAGCACCAAGTCACC
AAGAAACAAGGCGTTGAGGACCCATCTACCGTTGAAATTCCACCTGAGGT
ATCTGACGAACCACACTTTGATCCTTCCGAGGAACCCCAGACTGTTCGCC
GACGAACGTAATCTTGAAGAGCACGACGACACCAGAATGAAGATAAATGA
GAACATCATTGAAGGGGAGGAGGCCTCCAGCCAAACGTCAACCACCGCAG
TTCCTTTGTCACCGTGAACCACCTAAATCGATACCGAGCAAATGAAGAGA
ATCGGAGAAAAAAGCGAAGCTGAGCCTAAGCGAATTGAGGGACAGTGGAG
TTCACACTCCTTCTGTAAAACGCCAACTGGGTGCACGGAATCTGAATGAA
GCCAAAGAATGAAGAT
UFO10780.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dtg-RA | 2464 | CG6234-RA | 302..1417 | 9..1117 | 5010 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12651208..12651746 | 469..1008 | 2420 | 97.8 | Plus |
| 3R | 32079331 | 3R | 12650814..12651149 | 133..468 | 1680 | 100 | Plus |
| 3R | 32079331 | 3R | 12648359..12648482 | 9..132 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:53:52 has no hits.
UFO10780.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:20 Download gff for
UFO10780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6234-RA | 292..1290 | 1..1000 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:01 Download gff for
UFO10780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6234-RA | 294..1292 | 1..1000 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:07 Download gff for
UFO10780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dtg-RA | 294..1292 | 1..1000 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:07 Download gff for
UFO10780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12648351..12648482 | 1..132 | 97 | -> | Plus |
| 3R | 12650814..12651149 | 133..468 | 100 | -> | Plus |
| 3R | 12651208..12651738 | 469..1000 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:01 Download gff for
UFO10780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8474073..8474204 | 1..132 | 97 | -> | Plus |
| arm_3R | 8476536..8476871 | 133..468 | 100 | -> | Plus |
| arm_3R | 8476930..8477460 | 469..1000 | 98 | == | Plus |
