UFO10785.5prime Sequence
1122 bp (1012 high quality bases) assembled on 2012-01-17
> UFO10785.5prime
CAGTCGACATGGTCAAGAAGGAGGAATCACGGCTGCCACAAGCTGGTGAC
TTTCAGCTTAAGGAAGGATCAGTCGTGGATGCGACCCGAAAGTACAGTTA
CTTTGATCTGTTCAGATACTCAACCAGATGCGAGCGCTTCCTGTTGGTAG
TCAGTCTGCTGGTGGCCACCGCTGCGTCCGCATTTATTCCCTACTTCATG
ATTATCTACGGAGAGTTCACATCCCTGCTCGTGGACCGAACAGTCGGCGT
GGGCACATCCTCGCCAGCCTTTGCTCTGCCCATGTTTGGTGGCGGTCAGC
AATTGACAAATGCCAGCAAAGAGGAGAACAACCAGGCGATCATTGATGAT
GCGACTGCCTTTGGCATTGGCAGTCTGGTGGGATCTGTGGCCATGTTCCT
GCTCATCACACTGGCCATCGACTTGGCCAACCGGATAGCCCTCAACCAAA
TCGATCGCATCCGAAAGCTCTTCCTGGAGGCAATGCTGCGACAGGACATC
GCCTGGTACGACACCAGTTCGGGCTCCAACTTCGCCAGCAAAATGACAGA
AGACCTGGACAAACTGAAGGAAGGCATTGGCGAGAAAATAGTGATTGTGG
TATTCCTGATCATGACCTTTGTGATTGGAATAGTGTCTGCTTTCGTCTAC
GGATGGAAGCTCACCCTGGTCGTTCTAAGTTGTGTGCCCTTCATCATTGC
AGCCACCAGTGTGGTGGCTCGACTCCAGGGATCGCTGGCCGAGAAGGAGC
TGAAGTCCTACTCCGATGCAGCCAACGTGGTCGAGGAGGTATTCAGTGGA
ATTCGCACAGTGTTCGCATTCAGTGGTCAGGAGAAGGAGAAGGAACGCTT
TGGCAAGCTGCTCATTCCCGCAGAGAATACGGGTCGCAAGAAGGGTCTAT
ACTCGGGCATGGGGAACGCTCTGTCCTGACTGATCATCTACCTGTGCATG
GCCCTTTGCCATCTGGTATGGTGGTGACGCTCATTCTGGAACGAGCGTGA
TCCTCCCGATCGCGTTATACTCGACGTCTGGTCATTGTCCTGTCGCGTGA
TCATGGGTGCCAGAATCTTCGGGTTTTGGCACTCCTCTCTCCACACACAC
ACGCGAGTGAGTGAAAGCAAAT
UFO10785.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mdr49-RA | 4240 | CG3879-RA | 231..1309 | 9..1085 | 4980 | 98 | Plus |
| Mdr49-RB | 3624 | CG3879-RB | 157..693 | 551..1085 | 2270 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12943676..12944138 | 1016..551 | 2075 | 97.9 | Minus |
| 2R | 25286936 | 2R | 12944522..12944767 | 550..305 | 1230 | 100 | Minus |
| 2R | 25286936 | 2R | 12944826..12945021 | 305..110 | 980 | 100 | Minus |
| 2R | 25286936 | 2R | 12945086..12945187 | 110..9 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:54:17 has no hits.
UFO10785.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:22 Download gff for
UFO10785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mdr49-RA | 221..1307 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:12 Download gff for
UFO10785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mdr49-RA | 223..1309 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:15 Download gff for
UFO10785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mdr49-RA | 223..1309 | 1..1085 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:15 Download gff for
UFO10785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12943598..12944138 | 551..1089 | 95 | <- | Minus |
| 2R | 12944522..12944767 | 305..550 | 100 | <- | Minus |
| 2R | 12944827..12945020 | 111..304 | 100 | <- | Minus |
| 2R | 12945086..12945191 | 1..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:12 Download gff for
UFO10785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8831103..8831643 | 551..1089 | 95 | <- | Minus |
| arm_2R | 8832027..8832272 | 305..550 | 100 | <- | Minus |
| arm_2R | 8832332..8832525 | 111..304 | 100 | <- | Minus |
| arm_2R | 8832591..8832696 | 1..110 | 96 | | Minus |
