UFO10786.5prime Sequence
1152 bp (987 high quality bases) assembled on 2012-01-17
> UFO10786.5prime
CAGTCGACATGTCCACGATAGACGCGCTCTACAATCGTCCTGGGCCCAAC
CGCCTGCGGCAGGCGGATGCCTATCGCACCACCAATCGTCAGGATGCCGT
CAAGATTCGTATGGCCAAGGATGGAATCGGCGCAGAGGAGCCCATCTCCG
TGCCCGGCCTGCTGAAGCGTACGGTCAACAATTACGGCGACTATCCTGCG
CTGCGCACCAAGAACGGCAAAAACGGATATCACACTGTCACCTACAAACA
ATATGAGCAGAAGGTGCACCAGGTGGCCAAGGCGTTCATTAAGCTCGGTC
TGGAGGAGCACCATTCGGTGGGTGTGCTGGCCTTCAATTGCGCCGAATGG
TTCTACTCGGCCATGGGCGCCATTCACGCACGAGGCATCATCGCCGGAAT
CTACACCACCAATTCCGCCGATGCAGTGCAGCACGTTCTGGAGAGCTCAC
ATGCCCAAATCGTGGTCGTCGACGACGCCAAGCAAATGGACAAGATTCAC
GCCATTCGCGACAAGCTGCCCAAGCTCAAGGCCGCCATTCAGATCCAGGA
GCCCTATTCCCCCTACTTGAAGAAGGAGGATGGCTACTACAGGTGGTCGG
AGATCGAGTCGATGAACGTTAGCGACGTGGAGGATCAGTACATGACCCGT
TTGGAGAATGTGGCGATCAACGAGTGCTGCTGCCTGGTCTACACCTCCGG
AACGGTGGGCATGCCCAAGGGCGTGATGCTCTCCCACGACAACATCACCT
TCGATGTGCGCGGCATCGTCAAGGCCATGGACCGTGTGGTGGTTGGGGCG
GAGTCGATCGTCTCCTACCTGCCACTTTCGCACGTGGCCGCCCAGACCGT
GACCATTTACACCCTGCGCCTTTGTGGCGGGCTGCATTTGGTTTCGCCGA
CAAGGATGCGCTGAAGGGAAACGCTGGTGAAGTCGCTGCAGGATGCGCGA
CCCACGCCGATTCATGGGGCGTGCCGCGGTGTGTACGAAAAGTTCCAGGA
GCGAATGGTCGTCGTGTCCAGTTTCAGCGCAGCTGAAAAAGAATGCTTCG
CCAGCTGGGCCAGGTCATCACGCTGAAGCACTACATTGGGTGAATCAAGG
GCAAAGAACTTCCGGGGATTTCCGGTACAAAGAATTGCCAAGGCGCTCTC
AT
UFO10786.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bgm-RC | 2464 | CG4501-RC | 143..1272 | 7..1148 | 5030 | 96.9 | Plus |
| bgm-RA | 2501 | CG4501-RA | 180..1309 | 7..1148 | 5030 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14016537..14017025 | 593..1086 | 1805 | 95.2 | Plus |
| 2L | 23513712 | 2L | 14016132..14016477 | 248..593 | 1730 | 100 | Plus |
| 2L | 23513712 | 2L | 14015794..14016034 | 7..247 | 1175 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:54:24 has no hits.
UFO10786.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:23 Download gff for
UFO10786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bgm-RA | 171..1269 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:17 Download gff for
UFO10786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bgm-RA | 173..1271 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:19 Download gff for
UFO10786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bgm-RA | 173..1271 | 1..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:19 Download gff for
UFO10786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14015787..14016034 | 1..247 | 97 | -> | Plus |
| 2L | 14016132..14016477 | 248..593 | 100 | -> | Plus |
| 2L | 14016538..14017041 | 594..1104 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:17 Download gff for
UFO10786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14015787..14016034 | 1..247 | 97 | -> | Plus |
| arm_2L | 14016132..14016477 | 248..593 | 100 | -> | Plus |
| arm_2L | 14016538..14017041 | 594..1104 | 95 | | Plus |
