UFO10787.5prime Sequence
1157 bp (1044 high quality bases) assembled on 2012-01-17
> UFO10787.5prime
CAGTCGACATGCCGGCCAAAGTTAATAAAAAGGAGAATTTAGATGATCTC
AAACAGGAGTTGGATATCGATTTTCATAAAATCTCTCCTGAGGAATTGTA
TCAGCGCTTTCAGACACATCCCGAAAATGGTCTAAGTCACGCCAAGGCCA
AGGAAAACTTGGAGCGCGATGGTCCCAATGCGCTGACGCCACCCAAGCAG
ACGCCCGAATGGGTGAAGTTCTGTAAGAACCTGTTCGGTGGCTTCGCCAT
GTTGCTGTGGATCGGTGCTATTCTCTGCTTTGTGGCCTATTCTATCCAGG
CCAGCACCAGCGAGGAGCCGGCCGACGATAATTTGTATCTGGGTATTGTA
CTTTCCGCTGTCGTCATCGTGACGGGCATTTTCTCATACTATCAGGAATC
GAAAAGTTCTAAGATCATGGAATCGTTCAAGAACATGGTACCCCAGTTCG
CCACCGTCATCCGCGAGGGCGAGAAACTCACGCTGCGCGCTGAGGATCTC
GTTCTGGGCGATGTCGTTGAGGTGAAGTTCGGCGACCGTATCCCCGCTGA
TATCCGCATCATCGAGGCGCGCAACTTCAAGGTGGACAACTCCTCGCTGA
CCGGCGAGTCGGAGCCGCAGTCCCGCGGTGCCGAGTTCACCCATGAGAAT
CCGCTGGAGACCAAGAATCTGGCCTTCTTCTCCACCAACGCCGTCGAGGG
CACTGCCAAGGGTGTGGTCATCAGCTGTGGCGATCACACCGTCATGGGCC
GCATTGCTGGCCTTGCCTCCGGTCTAGACACCGGCGAGACGCCCATTGCC
AAGGAGATCCACCATTTCATCCACCTTATTACCGGCGTGGCCGTGTTCCT
GGGCGTCACCTTCTTCGTGATTGCCTTCATCCTGGGCTACCACTGGGCTG
GACGCTGTCATCTTTTTTGATCGGTATCATCGTCGCCAACGTGCCCGAGG
TCTGCTGGCCACCGTAACTGTGTGCCTGACCCTACCGCCAGCGTATGGCC
TCAAGAACTGTCTGGTGAGATCTGGAGGCCGTGGAGAACCCTTGGCCCCC
CATCGACATCTGCTCGGATAAGACGGCACCCCTCCACCCAGATCGATGAC
CGTCGCCCACCTGTGATTCGAATATCGATCATCAAGGCCGACACACCGAG
GGACCAG
UFO10787.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atpalpha-RK | 3721 | CG5670-RK | 307..1449 | 9..1145 | 5190 | 97.7 | Plus |
| Atpalpha-RJ | 5545 | CG5670-RJ | 229..1371 | 9..1145 | 5190 | 97.7 | Plus |
| Atpalpha-RI | 4524 | CG5670-RI | 163..1305 | 9..1145 | 5190 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20964255..20965013 | 393..1145 | 2945 | 95.8 | Plus |
| 3R | 32079331 | 3R | 20963927..20964194 | 129..396 | 1340 | 100 | Plus |
| 3R | 32079331 | 3R | 20963737..20963857 | 9..129 | 605 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:54:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Newton | 1510 | Dbuz\Newton NEWTON 1510bp | 1060..1114 | 75..132 | 130 | 72.4 | Plus |
| Dbuz\Newton | 1510 | Dbuz\Newton NEWTON 1510bp | 398..451 | 132..76 | 125 | 71.9 | Minus |
UFO10787.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:24 Download gff for
UFO10787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atpalpha-RE | 488..1648 | 1..1157 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:21 Download gff for
UFO10787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atpalpha-RI | 223..1383 | 1..1157 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:23 Download gff for
UFO10787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atpalpha-RI | 157..1317 | 1..1157 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:23 Download gff for
UFO10787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20963731..20963856 | 1..128 | 96 | -> | Plus |
| 3R | 20963927..20964193 | 129..395 | 100 | -> | Plus |
| 3R | 20964258..20964960 | 396..1094 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:21 Download gff for
UFO10787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16789453..16789578 | 1..128 | 96 | -> | Plus |
| arm_3R | 16789649..16789915 | 129..395 | 100 | -> | Plus |
| arm_3R | 16789980..16790682 | 396..1094 | 97 | -> | Plus |
