UFO10788.5prime Sequence
1108 bp (1041 high quality bases) assembled on 2012-01-17
> UFO10788.5prime
CAGTCGACATGACGAATAATGCGAAGAAGGAACCCCAGCAAAGGGGCAAG
CATCAGGTGCATAATGTGCGCTTCTACACTATAAAGCCGCGTGAAATTGT
CAGCTTGGCGTATAGTAAATCGAGCAAGTGCCTCGCTCTGAGTCGTGCAA
CACCCGTCATTGAGCTATGGAACCTGGAGCACGCCCCGTATTTGGATCGT
GTAATCCACCTGCCCACCGATTCTCATGTGGAATCTATAGCCTGGGCGGG
AAACCGCTTATTTTCCGTGGATTTAAGTGGTAAACTGATCGAGTGGGATG
TGATTAAGCTAAAACAACGATATGAGCACTCGCCCACTGGCAATGCTCTC
TGGAGTATCGATGTGAATCCCGCGGAAACGGATATTGCCATTGGCTCAGA
GGAAGGGCACATCAACATCCTGAGTATTGAGAATGACGAAATCACCTATA
AATCCCTATTTAACAAGCAAAAAGGTCGCGTTCTCTGCATCAAGTTTGAT
AAGACTGGAACTAAACTGGTGACCGGCACTGAGGGATTTGTTCGCATTTG
GAACGTCCTCAAGGGAACCACTCTGCACACGATGACCCTATCCGAAAAGA
ACGTAATAGTTTGGTCCCTGCAGGTGCTATCCGATAATACGATTATTGCC
GGTGATTCAGCGGGATTTGTTACCGTTTGGGATGCGGATAACGCGACACA
GATAGATTCCACACGAGTTCTGGATAAAAACGTATTTGCCCTGGCTGTGA
ATAATAAGGAGGATCGATTAGTTTGCAGTGGGAATGCAGCCGCCGCTCAT
CCGGATTTTCAGCAAAACCAAGATAAAGCGGGAAGAGTCCACCAGCGAGC
GTTGGATTAAATTCCTACAGCGCGATGCCCACAAACACTATGTGAATCCC
TGTTGGTTATCGACGATCAAATTTATTCGGGAGGCAGGGATGGCATATTG
ACCATTACGTCAGTGAACGATGCAGCACATTTGTCGCAGCATGCTCCTTT
CTGAAAGTCCGTAGCTCCATGCATCAGTAAAAGCTTTGCTTTGCAATATT
CCACAGCGTGACCTGTGGGCCTGGTTCTGTGCTCCGTAAGCAGAACAAAG
AACTTGGT
UFO10788.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)72Dn-RA | 2314 | CG5018-RA | 111..1199 | 9..1081 | 4965 | 98.1 | Plus |
| l(3)72Dn-RB | 2323 | CG5018-RB | 111..1199 | 9..1081 | 4965 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16227555..16228421 | 1007..145 | 4040 | 99.3 | Minus |
| 3L | 28110227 | 3L | 16228491..16228627 | 145..9 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:54:43 has no hits.
UFO10788.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:24 Download gff for
UFO10788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5018-RA | 63..1107 | 9..1042 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:25 Download gff for
UFO10788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)72Dn-RB | 111..1155 | 9..1042 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:25 Download gff for
UFO10788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)72Dn-RB | 111..1155 | 9..1042 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:25 Download gff for
UFO10788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16227555..16228420 | 146..1007 | 99 | <- | Minus |
| 3L | 16228491..16228627 | 9..145 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:25 Download gff for
UFO10788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16220655..16221520 | 146..1007 | 99 | <- | Minus |
| arm_3L | 16221591..16221727 | 9..145 | 100 | | Minus |
