UFO10789.5prime Sequence
1118 bp (1012 high quality bases) assembled on 2012-01-17
> UFO10789.5prime
CAGTCGACATGGACAAGGCACAACATCCACAGAAGCGGGAACAGAAGGAG
GAGCTGGGAGGTAAGCCGGAGGAGAAGGAGCCAATTTGCGAGGAGCAGCA
CGACGAAGAGTCCAACGAGCAGGGGGAAACACACAACGAGGGTGGGGAAA
TGCCAAATAAAACCGATAAGCAAATGCAGGGGGGACGAGAGCCCATCTAT
GAGAATGTCAGCTCGACTATATCTATGCATGAAGTAGATAATGAACAGAT
AGCAACTATGACGATAACCACACAGACCCAAGCGACGCGAATAAGTCACA
GGAGAAGCATTCCAAGCCAGCAAACCAGCAACAGTAACGAGAATAATCAA
AGCACTAATCAAACCAGCAACAGCAGGAATCAAAAAGAGAGCAGCACAGC
AGCAACATCGGCAGCGAACCCCGTGCCACCAACAACACCGGGGGAACAAG
CAGAGCCCTACTACCAAGTGCCGAAGGCCACGGAGCCCTACTACGATGCC
CCCAAGCATTTAAGGCCGGTGCCGGTATACGAAAATGTCGAGATCTTTTA
CTCGGGCCTGGAGATTAGTCAGGGATCTGTGGGAGCGCCAGTAGGGCTGA
TGGAGCCACCCAAGGAAAAGCCACCACCACCGCCCACCGAGAGTCCGATT
CCGCTGGACGAGGGCCATGACGACGAGCTGGATGGACTGGGCAACAGTCT
GGGCCACAACACAGACACCTGGTCATCGGACAACACCTACGAGACCATAT
CGAACGGCACTCGCCGGCACCTTCAGGGACAACCGGAACCCGCCCAACCC
TCGCCGCCCATCAAGAGGATGAACTCGACCAAACGGATCAAGAAGGAGTT
GCGCAACAAGCGCTCCAGCTTCCTGGGCATCGAAACGACGGCGATCTTGA
CGACATGGAGACCTATCTCGAGCTAACAGTGCCCCGCCTCCGATATGGCG
CAGCTCTTGCAGAGGAGCGCGACTGAGAGCAGCTGTACATCAGGCGGACT
CTGCGACAGTCGACCAGTGAAGCGCGATTCTGAGTCTGAAACCACTCTCG
CAGAGCAGTGGACATACCGTACTCCTCTGAGAGAACGATACCAGTCCAGG
CCACCGCGTCAATGGCCT
UFO10789.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43427-RJ | 4163 | CG43427-RJ | 281..1401 | 9..1104 | 4940 | 97.4 | Plus |
| CG43427-RI | 3810 | CG43427-RI | 281..1401 | 9..1104 | 4940 | 97.4 | Plus |
| CG43427-RH | 6180 | CG43427-RH | 2546..3666 | 9..1104 | 4940 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4707086..4708042 | 9..962 | 4635 | 99.7 | Plus |
Blast to na_te.dros performed 2014-11-27 20:54:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6677..6883 | 225..441 | 170 | 58.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1070..1154 | 350..436 | 158 | 71.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1175 | 299..407 | 146 | 63.7 | Plus |
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 7205..7320 | 646..759 | 125 | 57.8 | Plus |
UFO10789.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:25 Download gff for
UFO10789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31534-RC | 274..1360 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:29 Download gff for
UFO10789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43427-RH | 2539..3625 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:29 Download gff for
UFO10789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43427-RH | 2539..3625 | 1..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:29 Download gff for
UFO10789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4707079..4708106 | 1..1017 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:29 Download gff for
UFO10789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 532801..533828 | 1..1017 | 98 | -> | Plus |
