UFO10790.5prime Sequence
1130 bp (970 high quality bases) assembled on 2012-01-17
> UFO10790.5prime
CAGTCGACATGCCCTCCCTGCGCCAGAAAGTCACCACTTACTTCCGCCAG
TTGAGCTTCATCGCGGAGCCTCGCCAGGGTCGCCGGCGGGCCAGCGAGCA
CGAGGATGATGATGGTAGCTTCATAACTAAATATCTGGAGGGCCGAATGC
AGCGTCAGTTTGTTGAGGGTCCGGAGATTTACAATGGCCAGAATCCCACG
GACATGCCCGTTCTCAAGTTGGATACATACGAAGCTGGAAACTGCTCTAT
AACAGCCGCCTGCACAGGTCCTGACGAGGGGCTCACCGGCATCAAGCGCT
CCAAACTGCACTTGAGCACCAGCTTCGCGGATGACATTGACTTCATAGAT
ACGCAGCAGGAGAACGATGATTGCTATGGCGTTAGGAGGAGTACACCACC
AGTTCAGGTGGCCACACAGAACTCAACCCGACTTACCAGCAAATTCGGAC
GGCCGCCGGCAGGACCTCGCAGACAGAGCAGTGCGGAGCAGCCCTCCGGA
TCTGCTTCTGCGTCGGGAATGCGTTCCCGCAAGAATTCCAAAAGCAGCAT
AGCCAATCTGGCCGCTGCGTCTGCTGGCACGGATGCTGGAAAAGCCAACA
GCGATCAGAACAATAGGAATGTGTTAAATGCAAAGACTGAGGTCTCGACG
GATGGGGATCCCAACTCAGAGCGGGAACGTTTGCTCCGCGAAGCTGTAAG
CAACCAGGGTGGCTCTGATCCCGCAGCTTTGATCGCTGGCGTGGAGAACT
GGCGCATGGAGTGCGACTTCGCATATGGTATCTCGGTGTCCCTCTACGAG
ACCAACATGCTGACTAAAGAACCCATGGGCAATCCCATCGCCGACTGCTA
CGGAATGGTAGTGCGCGGAGACTCAGCTGCCATGGCCATGGCAGATGGTG
TCCACTGGGTGATGGCGCTCGTCTGGCCGCCCGTTCAGCTTGTTCACGTT
GTTTGACTATCTGGGACCGGGCGGTCTTCGGACCAGGCGCCTGGATGCCG
AGCCACCACACCCAAGAGATTTTTGTGAGTTGCCTGCCTAGTCTTTGGGA
GACACGTTGTATCCTGAGTTGGAAGACCCTATCCTACCCTCCACACAATA
CCGGTTTGGGCTGCCGCCCTGACGGACCGC
UFO10790.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9801-RC | 3294 | CG9801-RC | 331..1412 | 9..1083 | 4925 | 97.7 | Plus |
| CG9801-RB | 3327 | CG9801-RB | 364..1445 | 9..1083 | 4925 | 97.7 | Plus |
| CG9801-RA | 3476 | CG9801-RA | 513..1594 | 9..1083 | 4925 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8737799..8738709 | 1051..142 | 4075 | 97.7 | Minus |
| 3R | 32079331 | 3R | 8738778..8738911 | 142..9 | 625 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:55:00 has no hits.
UFO10790.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:26 Download gff for
UFO10790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9801-RC | 306..1376 | 9..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:34 Download gff for
UFO10790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9801-RA | 513..1583 | 9..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:33 Download gff for
UFO10790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9801-RA | 513..1583 | 9..1073 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:33 Download gff for
UFO10790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8737772..8738708 | 143..1073 | 97 | <- | Minus |
| 3R | 8738778..8738911 | 9..142 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:34 Download gff for
UFO10790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4563494..4564430 | 143..1073 | 97 | <- | Minus |
| arm_3R | 4564500..4564633 | 9..142 | 97 | | Minus |
