UFO10792.5prime Sequence
1099 bp (1002 high quality bases) assembled on 2012-01-17
> UFO10792.5prime
CAGTCGACATGGAGGTGTTCCAGACCGACTCGCACTATATCTTCGTGAAG
CGGGACAAGAGTTTGTGGTGGCACCGAAGGACGTCTGAGTTCTCCATAAA
AGCAGGATGGGATCTCAGTTCTGTGGACGACATAGAATGCATTGGCGTGA
CACACGGAATTGTTGGTGTAATCTCACTGCCCAATGTCTATGAACCCCAT
TTAGTTGTGGTAAAGGAGGCTTCGGCAGTGGGCGTTCTATATCCACCACA
CTTGGTGTACAAAATCAAGTCGATATGCATTCTGAGTGCCGACGATCCGG
ACACCGATTTGCCCAATTGCACCAAGCACACCAAGAGCAACCAGTCCACG
CCCACCCACAGCGTCTCCACCTCCAACAACAACAATGCCAGCGTTCCGTC
GAGCGGCGGAGGCTCCTCAAAGAGCACCAAACTATTCGAAGGCATGAACA
AGACGTGGGGCGCCGTAAAGAGTGCAGGCAACACTATTAAGAATACTACC
CAGCAAGCTGCGAATTTGGCCACCAAGCAGGTTAAGTCATCTGTGGGCAT
TCGGGAGCCCAGGCATATTGAACGCCGCATAACGGAGGAATTACACAAGA
TATTCGACGAGACGGACAGCTTTTATTTCAGCTTCGACTGCGATATCACC
AACAATCTGCAGCGCCATGAGGCCAAATCGGAGGAAAGTCAGTCTCAGCC
GGATGAGAGATTCTTTTGGAACAAGCATATGATAAGAGATTTGATTAACT
TGAATGACAAAACTTGGATACTCCCCATCATTCAGGGATTCATGCAAGTT
GAAAATTGTGTCATAGGCAATGAATGCTTCACCTTGGCCCTTGGTTTTCG
CGAAGATCGCGTCATCGTGCGGAACACGCTACAAGAGACGGGGCGTAGAC
GAAAAGGGAAAACTGTGCCAATTACGTAGAAACGGAACAAATACTCTCAT
TCCGTCATCACAGCTTTCCTTTCACCCAGTGCGTGATCTGTGCTATCTAC
TGGAGCAGCGGGCTACAGTATTCGCTACAACACGCTCGATCGAGGGCTGC
GAGACCACAGCCTTGACTGCCTTACAGACTGGAACCTATGGCGGGTTCA
UFO10792.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7956-RG | 3796 | CG7956-RG | 128..1172 | 8..1046 | 4820 | 98.3 | Plus |
| CG7956-RF | 3652 | CG7956-RF | 128..1172 | 8..1046 | 4820 | 98.3 | Plus |
| CG7956-RE | 3770 | CG7956-RE | 128..1172 | 8..1046 | 4820 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21523083..21523509 | 330..756 | 2120 | 99.8 | Plus |
| 3R | 32079331 | 3R | 21522801..21523033 | 103..335 | 1165 | 100 | Plus |
| 3R | 32079331 | 3R | 21521055..21521153 | 8..106 | 495 | 100 | Plus |
| 3R | 32079331 | 3R | 21523567..21523681 | 756..872 | 490 | 96.6 | Plus |
| 3R | 32079331 | 3R | 21523751..21523881 | 878..1006 | 400 | 93.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:55:16 has no hits.
UFO10792.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:27 Download gff for
UFO10792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7956-RC | 107..1169 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:43 Download gff for
UFO10792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7956-RE | 124..1186 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:40 Download gff for
UFO10792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7956-RE | 124..1186 | 1..1059 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:40 Download gff for
UFO10792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21521051..21521152 | 1..105 | 97 | -> | Plus |
| 3R | 21522804..21523032 | 106..334 | 100 | -> | Plus |
| 3R | 21523088..21523508 | 335..755 | 100 | -> | Plus |
| 3R | 21523567..21523675 | 756..866 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:43 Download gff for
UFO10792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17346773..17346874 | 1..105 | 97 | -> | Plus |
| arm_3R | 17348526..17348754 | 106..334 | 100 | -> | Plus |
| arm_3R | 17348810..17349230 | 335..755 | 100 | -> | Plus |
| arm_3R | 17349289..17349397 | 756..866 | 98 | -> | Plus |
