UFO10794.5prime Sequence
1116 bp (992 high quality bases) assembled on 2012-01-17
> UFO10794.5prime
CAGTCGACATGGAGTGTTTCAATGCGGAAATACCAGCTGACGGAGTGGTT
AATAGCATAGAGACCGAAGAGATTTCGGAAAATGTAGTGAAAGCTGATGA
AACCACGCTGGCAAATGGTGAGGATGAAGCCGGAAAAGCCGGCGAGGAAT
ATGCTTACTTGGAGCGAAATGAATTCACTTCGGAAATATTCAAAGTTGAA
GTGAAGAACATGGGATATTTCGGTATTGGGGAGTTTAAGAAGCTTTTGAG
AAACACCCTCAAATTTGACGTGACCAAAATCAAGGCTCCAACTCGAAAAG
AGTTCGCCTTTGTGTGCTTCCGCAGTCAGGAGGATCAACAAAGGGCCTTG
GAGATCCTGAATGGATACAAATGGAAGGGAAAGGTGTTGAAGGCTCATGT
TGCCAAGGCCTCGGCCGATCCTCTACAGAAAAAGCGAGCTGCCGAGGAAC
AGGAGTCGGAGAGAAAGCCCAAGAAACAACGTACGGCGGTGGAAGCCACG
TGTCCTCTGTCGCACATTGCCTACGACCAGCAGATTAAACAAAAATCCGA
GGAAATGTCGGCACTTCTGGCGAAATACACCCAGGAACTTCGGAAGGTCA
ATCCGCGGGCAAAGCCCCACTTGGATAAGTTCCAATTCCACGAGGTGCTT
CCCTCACCCACCGTTAATGGGTATAGAAATAAAAACGAGTTCACCGTGGG
AAAGAACTCCGTAGGCGAAGTGGTTGTGGGCTTCAGATTGGGCTGCTACA
GCGATGGATCTGTGGAAGTAGCCGAGGTCGCAGACTTGCCACATCTACCG
GAGCGGCCAAGTGGGCTGCTCGCAGTTTCCAGGACTTGGTGAGGAAGTCC
AAGTTCTTGCCCTTCAATCCGGACGGAAATATTGGCCACTTCCGGCAGCT
AATGTGCGGTGCTCCCAGTGCCCACAGGTGAACTAATGCTGGTGGCGGGC
ATAATACCTCCTCGACCTTAAGTGAGACGACCAGTTGACTTTAGGCAGAA
CTGAAGTTCCTTCTTACGAAGATCTGCCAATGAATGCTCCGTTACATTGC
AGCCCCTCTGTTATAACCAGATGTCAGCATCGGTGCCAGTTCAAGACGAA
TTATTTCGGGGTGAAC
UFO10794.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3808-RA | 2522 | CG3808-RA | 89..1162 | 9..1083 | 4810 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18999520..19000243 | 953..230 | 3430 | 99.4 | Minus |
| 3L | 28110227 | 3L | 19000298..19000520 | 231..9 | 1115 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:55:29 has no hits.
UFO10794.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:28 Download gff for
UFO10794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3808-RA | 83..1033 | 1..953 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:52 Download gff for
UFO10794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3808-RA | 83..1033 | 1..953 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:46 Download gff for
UFO10794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3808-RA | 83..1033 | 1..953 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:46 Download gff for
UFO10794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18999457..19000242 | 231..1017 | 97 | <- | Minus |
| 3L | 19000299..19000525 | 1..230 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:52 Download gff for
UFO10794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18992557..18993342 | 231..1017 | 97 | <- | Minus |
| arm_3L | 18993399..18993625 | 1..230 | 98 | | Minus |
